Click here to switch to the map view.

The map label for this gene is 78049972

Identifier: 78049972

GI number: 78049972

Start: 5091723

End: 5092514

Strand: Reverse

Name: 78049972

Synonym: XCV4416

Alternate gene names: NA

Gene position: 5092514-5091723 (Counterclockwise)

Preceding gene: 78049975

Following gene: 78049969

Centisome position: 98.34

GC content: 56.57

Gene sequence:

>792_bases
ATGTTGCAGAAACTCAAAATCGCTGCACCAGAAAGTAATCGATTAAACATCGATGGAGATCTGGAATTACCTTCAACGCC
GTATCTAATCGTCAAAAGCGCAAGCGATTATCTGCTGTTTGAGATGTTCGCAAATGGCACTGCGTGCTCTTTCAAAGCGC
AGTACATCGCACTACAAACCGTGGCCGCTGATCGTCCTTGCACCATAAACTCACACTCAGGAGTGATCAAAATGATCCAG
AAAAAAAACCGTCGTTGTGCGCTTGCGGCATGCAGCCTCTCGCTTGTGGCGATGGTGCTGTGTATGAGCGCAGCTGTTGC
CGCACCGGTGCCCGGGAAGGACACCGTCACGTTGCGCCATGTCTTCGCCACGCTGCAGAACGGTCAGCAGGATCAGAAGC
CCGAAGATGTTGCGGCGTGTCGCAAGCAGGTTGCCGAGCCGACGTCCAAATACCTGGGAGTGGCGGTCACCACCACCTAT
TCCATCGATGTGCAGTCGAAGATGATGACCGCTTCGGCGTCGCTGCCATCGCCTGTTGCCACGCAGCCGTTGATGCTCAC
GGTGCCGCTGTCGCCGTTGGGGTTGTCCGGCGACTATGCGTTTGGTGCATTCCGGCCGAGCGCACTGCCCAACACCTATG
TGCTGTTCTCGGTCGGGCTGAATTTCAAGGACCCCAAGTCGTCCGTGCTCGTGCTCAACAGCGACAAGCGCTACAACTGC
CTGGTCACCAGCGATCCGGCGCCCTTCCAGGGAGCCTTGAGCAGCCAGCTTGGAAAGGACCAGGGGCGTTGA

Upstream 100 bases:

>100_bases
AGTTGTTTTCTAGCTCGATCGACCGAACCCGGTTTGCTCTCCTCTGAAAATCAAAACTGCATCACGTAACGAAATCGCTG
AGACGATTTGTCGGGTTGGC

Downstream 100 bases:

>100_bases
TGTTGCAGCGTCCCAGTCGCCGCCGGACGGGCCAGCCGACCAGGGCTTCAGCGCGTTCGACCAATCGCTAAGCGGCCGCG
TCCCCGGAGCAGGATGTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MLQKLKIAAPESNRLNIDGDLELPSTPYLIVKSASDYLLFEMFANGTACSFKAQYIALQTVAADRPCTINSHSGVIKMIQ
KKNRRCALAACSLSLVAMVLCMSAAVAAPVPGKDTVTLRHVFATLQNGQQDQKPEDVAACRKQVAEPTSKYLGVAVTTTY
SIDVQSKMMTASASLPSPVATQPLMLTVPLSPLGLSGDYAFGAFRPSALPNTYVLFSVGLNFKDPKSSVLVLNSDKRYNC
LVTSDPAPFQGALSSQLGKDQGR

Sequences:

>Translated_263_residues
MLQKLKIAAPESNRLNIDGDLELPSTPYLIVKSASDYLLFEMFANGTACSFKAQYIALQTVAADRPCTINSHSGVIKMIQ
KKNRRCALAACSLSLVAMVLCMSAAVAAPVPGKDTVTLRHVFATLQNGQQDQKPEDVAACRKQVAEPTSKYLGVAVTTTY
SIDVQSKMMTASASLPSPVATQPLMLTVPLSPLGLSGDYAFGAFRPSALPNTYVLFSVGLNFKDPKSSVLVLNSDKRYNC
LVTSDPAPFQGALSSQLGKDQGR
>Mature_263_residues
MLQKLKIAAPESNRLNIDGDLELPSTPYLIVKSASDYLLFEMFANGTACSFKAQYIALQTVAADRPCTINSHSGVIKMIQ
KKNRRCALAACSLSLVAMVLCMSAAVAAPVPGKDTVTLRHVFATLQNGQQDQKPEDVAACRKQVAEPTSKYLGVAVTTTY
SIDVQSKMMTASASLPSPVATQPLMLTVPLSPLGLSGDYAFGAFRPSALPNTYVLFSVGLNFKDPKSSVLVLNSDKRYNC
LVTSDPAPFQGALSSQLGKDQGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28113; Mature: 28113

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQKLKIAAPESNRLNIDGDLELPSTPYLIVKSASDYLLFEMFANGTACSFKAQYIALQT
CCCCEEEECCCCCEEECCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEEEEEEEEE
VAADRPCTINSHSGVIKMIQKKNRRCALAACSLSLVAMVLCMSAAVAAPVPGKDTVTLRH
EECCCCEEECCCCCHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
VFATLQNGQQDQKPEDVAACRKQVAEPTSKYLGVAVTTTYSIDVQSKMMTASASLPSPVA
HHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHEEEEEEEEEEEEEHHHEEEECCCCCCCCC
TQPLMLTVPLSPLGLSGDYAFGAFRPSALPNTYVLFSVGLNFKDPKSSVLVLNSDKRYNC
CCCEEEEECCCCCCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCEEE
LVTSDPAPFQGALSSQLGKDQGR
EEECCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MLQKLKIAAPESNRLNIDGDLELPSTPYLIVKSASDYLLFEMFANGTACSFKAQYIALQT
CCCCEEEECCCCCEEECCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEEEEEEEEE
VAADRPCTINSHSGVIKMIQKKNRRCALAACSLSLVAMVLCMSAAVAAPVPGKDTVTLRH
EECCCCEEECCCCCHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
VFATLQNGQQDQKPEDVAACRKQVAEPTSKYLGVAVTTTYSIDVQSKMMTASASLPSPVA
HHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHEEEEEEEEEEEEEHHHEEEECCCCCCCCC
TQPLMLTVPLSPLGLSGDYAFGAFRPSALPNTYVLFSVGLNFKDPKSSVLVLNSDKRYNC
CCCEEEEECCCCCCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCEEE
LVTSDPAPFQGALSSQLGKDQGR
EEECCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA