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The map label for this gene is yicJ [H]

Identifier: 78049852

GI number: 78049852

Start: 4935057

End: 4936439

Strand: Reverse

Name: yicJ [H]

Synonym: XCV4296

Alternate gene names: 78049852

Gene position: 4936439-4935057 (Counterclockwise)

Preceding gene: 78049857

Following gene: 78049851

Centisome position: 95.33

GC content: 63.63

Gene sequence:

>1383_bases
ATGACGTCATCGCCCGCAACGTCTCCTGCATCGGCGCGCCTGCGCTGGCGCGAAAAGCTGGGCTATGGTGCCGGCGATCT
GGGTCTGAATCTGTACTGGGCCAACATCTCGGCGTTCTTGCTGATCTTCTACACCGACACCATGCACCTGCCGGCGGCTG
CAGTCGGCACCATGATCCTGTTGACCAAGATCGCCGATGCGATCGCCGACCCGGCGATGGGCGCATTGGCCGACCGCACG
CGCAGCCGGCTGGGCAAGTTCCGCCCGTACCTGTTGTGGGGTGCGTTGCCGATGGCTGCTGCCGGCGTGCTTGCCTACAC
CACGCCGGATCTGGACCAGCATGGGCGTATGTGGTGGGCCACGATCACCTTCCTGGTGATGATGCTGGCCTACACGGTGG
TGAGCATTCCGTACTCGGCACTATCCGGCGTGATCACCGCCGACAGCCAGCAGCGTACCGGTCTGATCAGCCTGCGTTTC
ATCGGTGCATTTGCAGGGACCACGTTGGTCAATTACTTCACGATGGACCTGGTGCGCTGGTTCGGCGCAGGCAACGATGC
GCTAGGATGGCAACGCACGATGCTGCTGTATGGCGCAGTGGCGCTGGCGTTGTTCGTCACCGTGGCGCTGACCACGCGCG
AACGCGTGCAGCCGCCGCCGCAACAACGCACGCCGATTCGTCGTGACATCGCCGACCTGCTGCAGAACAAACCGTGGTGC
GTACTGTTCGTGCTGTCGTTGATCATCATGATCACGATCACCATGCGCGGCGGTGCGGGCGTGTACTACCTCAAGTACTA
CGTACAACGTCCGGATCTGGTCGGCCTGTTTCTGGGCAGCTACTCGGTGGCCCTGGGCGTGGGTGCGGCCATCACGCCGC
TGCTGACGCGGCGCTGGGACAAGCGCCAGCTGATGTTCTGGCTGATGGTGCTTGTTGGCCTGCTGAGTTGTGCGATGTTT
TTCGTGCCGGCCGATGCGGTGTGGGCGGTGTTTGTCTTGAACATGCTGATCGGCCTGGCGCTGGGGCCGAAATCGCCGTT
GGCGTTTTCGATGTATGCCGATAGCGCCGACTACACCGAATGGCGCACCGGCCGCCGTGCCACGGCGATGACGTTCGCCG
CGGCGACGTTTTCGCAAAAGCTCGGCGGGGCGTTGGCCTCGGCCGGCATTGCCTGGGTGCTGGCTGCAATGGGCTATGTC
GCCAATACCGCGCAGTCCACCGGGTCGTTGACCGGCATCGTGCTGTTGCTGACAGTGATTCCAGGCGCGGTTGCGCTGCT
GGCGGCCTGGACCATGCGCTTTTATCCGCTGGACGACGGGCTGTTGAACCGCATCCAGCTCGAACTGGCCGCGCGCAAGC
GCGACGAACCGGAGCACCCCTGA

Upstream 100 bases:

>100_bases
CAGCCGATGCGTGGTGTAGCGTCGGCGCTCCTCGCCAGGTGCGCGGGCACCCAGCGTAACGGCGTGCTCGGCCGGGTACA
ACGCATTTGAAGGTGTGTCG

Downstream 100 bases:

>100_bases
CCGTGTCTGCAACGCCCCCCGCCACGTCCGATGCGCTGTCCAGCCTGATGGCGCCCAGCGCCGATGGTGCGCGCTATGCG
CTCTACAGCCCTACTGCAAT

Product: glycoside-pentoside-hexuronide:cation symporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MTSSPATSPASARLRWREKLGYGAGDLGLNLYWANISAFLLIFYTDTMHLPAAAVGTMILLTKIADAIADPAMGALADRT
RSRLGKFRPYLLWGALPMAAAGVLAYTTPDLDQHGRMWWATITFLVMMLAYTVVSIPYSALSGVITADSQQRTGLISLRF
IGAFAGTTLVNYFTMDLVRWFGAGNDALGWQRTMLLYGAVALALFVTVALTTRERVQPPPQQRTPIRRDIADLLQNKPWC
VLFVLSLIIMITITMRGGAGVYYLKYYVQRPDLVGLFLGSYSVALGVGAAITPLLTRRWDKRQLMFWLMVLVGLLSCAMF
FVPADAVWAVFVLNMLIGLALGPKSPLAFSMYADSADYTEWRTGRRATAMTFAAATFSQKLGGALASAGIAWVLAAMGYV
ANTAQSTGSLTGIVLLLTVIPGAVALLAAWTMRFYPLDDGLLNRIQLELAARKRDEPEHP

Sequences:

>Translated_460_residues
MTSSPATSPASARLRWREKLGYGAGDLGLNLYWANISAFLLIFYTDTMHLPAAAVGTMILLTKIADAIADPAMGALADRT
RSRLGKFRPYLLWGALPMAAAGVLAYTTPDLDQHGRMWWATITFLVMMLAYTVVSIPYSALSGVITADSQQRTGLISLRF
IGAFAGTTLVNYFTMDLVRWFGAGNDALGWQRTMLLYGAVALALFVTVALTTRERVQPPPQQRTPIRRDIADLLQNKPWC
VLFVLSLIIMITITMRGGAGVYYLKYYVQRPDLVGLFLGSYSVALGVGAAITPLLTRRWDKRQLMFWLMVLVGLLSCAMF
FVPADAVWAVFVLNMLIGLALGPKSPLAFSMYADSADYTEWRTGRRATAMTFAAATFSQKLGGALASAGIAWVLAAMGYV
ANTAQSTGSLTGIVLLLTVIPGAVALLAAWTMRFYPLDDGLLNRIQLELAARKRDEPEHP
>Mature_459_residues
TSSPATSPASARLRWREKLGYGAGDLGLNLYWANISAFLLIFYTDTMHLPAAAVGTMILLTKIADAIADPAMGALADRTR
SRLGKFRPYLLWGALPMAAAGVLAYTTPDLDQHGRMWWATITFLVMMLAYTVVSIPYSALSGVITADSQQRTGLISLRFI
GAFAGTTLVNYFTMDLVRWFGAGNDALGWQRTMLLYGAVALALFVTVALTTRERVQPPPQQRTPIRRDIADLLQNKPWCV
LFVLSLIIMITITMRGGAGVYYLKYYVQRPDLVGLFLGSYSVALGVGAAITPLLTRRWDKRQLMFWLMVLVGLLSCAMFF
VPADAVWAVFVLNMLIGLALGPKSPLAFSMYADSADYTEWRTGRRATAMTFAAATFSQKLGGALASAGIAWVLAAMGYVA
NTAQSTGSLTGIVLLLTVIPGAVALLAAWTMRFYPLDDGLLNRIQLELAARKRDEPEHP

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Escherichia coli, GI87082306, Length=451, Percent_Identity=40.1330376940133, Blast_Score=308, Evalue=6e-85,
Organism=Escherichia coli, GI1786466, Length=447, Percent_Identity=33.7807606263982, Blast_Score=276, Evalue=2e-75,
Organism=Escherichia coli, GI145693206, Length=470, Percent_Identity=28.936170212766, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1790561, Length=458, Percent_Identity=27.9475982532751, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI48994989, Length=456, Percent_Identity=27.6315789473684, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1787902, Length=464, Percent_Identity=28.448275862069, Blast_Score=157, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50223; Mature: 50092

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00872 NA_GALACTOSIDE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSPATSPASARLRWREKLGYGAGDLGLNLYWANISAFLLIFYTDTMHLPAAAVGTMIL
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHEEHHEEECCCCCCHHHHHHHHH
LTKIADAIADPAMGALADRTRSRLGKFRPYLLWGALPMAAAGVLAYTTPDLDQHGRMWWA
HHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHH
TITFLVMMLAYTVVSIPYSALSGVITADSQQRTGLISLRFIGAFAGTTLVNYFTMDLVRW
HHHHHHHHHHHHHHHCCHHHHCCCEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
FGAGNDALGWQRTMLLYGAVALALFVTVALTTRERVQPPPQQRTPIRRDIADLLQNKPWC
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHH
VLFVLSLIIMITITMRGGAGVYYLKYYVQRPDLVGLFLGSYSVALGVGAAITPLLTRRWD
HHHHHHHHHHHHHEECCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCC
KRQLMFWLMVLVGLLSCAMFFVPADAVWAVFVLNMLIGLALGPKSPLAFSMYADSADYTE
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHH
WRTGRRATAMTFAAATFSQKLGGALASAGIAWVLAAMGYVANTAQSTGSLTGIVLLLTVI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
PGAVALLAAWTMRFYPLDDGLLNRIQLELAARKRDEPEHP
HHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TSSPATSPASARLRWREKLGYGAGDLGLNLYWANISAFLLIFYTDTMHLPAAAVGTMIL
CCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHEEHHEEECCCCCCHHHHHHHHH
LTKIADAIADPAMGALADRTRSRLGKFRPYLLWGALPMAAAGVLAYTTPDLDQHGRMWWA
HHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHH
TITFLVMMLAYTVVSIPYSALSGVITADSQQRTGLISLRFIGAFAGTTLVNYFTMDLVRW
HHHHHHHHHHHHHHHCCHHHHCCCEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
FGAGNDALGWQRTMLLYGAVALALFVTVALTTRERVQPPPQQRTPIRRDIADLLQNKPWC
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHH
VLFVLSLIIMITITMRGGAGVYYLKYYVQRPDLVGLFLGSYSVALGVGAAITPLLTRRWD
HHHHHHHHHHHHHEECCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCC
KRQLMFWLMVLVGLLSCAMFFVPADAVWAVFVLNMLIGLALGPKSPLAFSMYADSADYTE
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHH
WRTGRRATAMTFAAATFSQKLGGALASAGIAWVLAAMGYVANTAQSTGSLTGIVLLLTVI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
PGAVALLAAWTMRFYPLDDGLLNRIQLELAARKRDEPEHP
HHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]