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The map label for this gene is ndvB [H]

Identifier: 78049851

GI number: 78049851

Start: 4932655

End: 4935054

Strand: Reverse

Name: ndvB [H]

Synonym: XCV4295

Alternate gene names: 78049851

Gene position: 4935054-4932655 (Counterclockwise)

Preceding gene: 78049852

Following gene: 78049848

Centisome position: 95.3

GC content: 65.83

Gene sequence:

>2400_bases
GTGTCTGCAACGCCCCCCGCCACGTCCGATGCGCTGTCCAGCCTGATGGCGCCCAGCGCCGATGGTGCGCGCTATGCGCT
CTACAGCCCTACTGCAATGCCCAATGCCGGCGGCTTCCTGTGGAACCGCCGCATGATGGTGCAGCTGACCTGCCGCGGTT
ATGCCACCGGCCAGTTCATGCAGCCGGAGCCATCGAAATACGCGCATGCGCCGATGCTGGAAGCGCGCAATTTCATGATG
CCCGAGCAGCCGTACTACGCGCATCATCCCGGTCGCTTTTTCTATCTCAAGGACGAAGACACCGGCGCGTTGTACTCGGT
GCCGCATGAACCGGTGCGCGCGCAGCCGCAAGCGTTTGAATTCTCTGCAGGCAAGCACGATGTGCGCTGGCGGGTGCGCC
ACGACGACATCGTGGTGGAGTTGTGCGTGTCTCTACCCACCGACGATGCGGTGGAGCTGTGGGAATGTCGTGTGCACAAC
CTGTCCGGGCGCGCACGCAGGCTGAGCCTGTATGCCTATTTCCCGGTCGGCTACATGTCGTGGATGCATCAGTCCGGCGG
TTACGAGCCGGCCTTGGGCGCAATCGTCTGCCGTAGCGTGGCGCCGTATCAAAAGGTGGACGATTACTTCCGCCAGCGCG
ATTTCAAGGACTGCACCTTCCTGCTGCACGAGCAGACGCCGGTGGCCTGGGACGCGCAGCAGATGGCATTCGAAGGCGAG
GGCGGGTTGCACGCGCCTTCGGCCGTGCAGGCCGAGCAGCTGGGCAACCACGATGCGCACTACGAAACGCCTGCCGCCGC
GTTGCAATACCGGCTGACACTGGACGCCGATGCGGCCAGCGTGTATCGCTTCGCATTCGGGCCGGCCAAGGATGATGCCG
AAATCGCTGCGCTGCGTGCGCGCTATCTCTCCGAAGCCGGTTTCGCCCAGGCGGCGCGTGAATATGCGGAGTATCTGCAG
GCCGGTCGTGGCTGCGTGCAGATCGCAACACCCGATGCGGCGCTGGACAATCTGGTCAACCATTGGTTGCCGCGCCAGGT
GTTCTATCACGGCGACGTCAATCGCCTGACCACCGATCCGCAGACGCGCAATTATCTGCAGGACCATATGGGCATGGCCT
ACCTGCAGCCCGCCACCGCACGCGCGGCGCTGTTGCACGCCCTGTCGCAGCAGGAGCCCAGCGGCGCAATGCCGGACGGC
ATCTTGTTGGTGGAAGGCGCCGAGCTCAAATACATCAACCAGGTGCCGCATACCGATCATTGCGTGTGGTTGCCGATCTT
TTTGAGCGCCTATCTGGCCGAAACCGGCGATACCAGCATCCTGGACACGCTCGTGGAAACCCATGACGGGCAGCGCCTGA
GCGTGGCCGAGCGCCTGGATGCGGCCATGCAGTGGCTACTGGATGCGCGCGATGCACGTGGGTTGAGCTTCATCGCGCAG
GGCGACTGGTGCGACCCGATGAACATGGTCGGCTGGCGCGGCAAGGGCGTGTCCGGCTGGCTCACCGTGGCCACCGCGTA
TGCAGTGCGCCTGTGGTCGGAGATCTGCACCGCGCAAGGGCGCAGCGCGCAGGCGCAGGCATTCGGCGAGGCGGTTGCCG
TCATCAACGCCGACGCCAACCGTGAGCTGTGGGACGGCAACTGGTACGCGCGCGGCATCACCGACGACGGGGTGCGCTTC
GGCATCGCCGACGATGTGGAGGGGCGCATCTATCTCAATCCGCAGAGTTTCGCGCTGCTGGCCGGCACTGCCGATGCACA
GCAACGTGCGGCGCTGCTGGAGGCGGTGCGCGAGCAGCTGCACACACCGTATGGCCCGGTGATGCTGGCGCCGGCGTACA
CGCACATGCGCGATGACGTAGGACGGCTGACCCAGAAGTGGCCGGGCGCGGCGGAAAACGGCGCGGTGTACAACCACGCG
GCGGCATTCTATCTGTACAGCCTGTACCAGATTGGCGAGGCCGACCGCGCCTGGGAAATCCTGCGCGCATTGCTGCCGGG
GCCGACCCGCGAGGATGTGCTGCAACGCGGCCACCTGCCGGTGTCGCTGCCCAACTACTACCGTGGCGCGTGGCATCAAT
ACCCGCGCACGGCCGGGCGCTCGAGCCAGCTGTTCAACACCGGCACGGTGGCGTGGGTGTATCGCTGCGTGCTGGATGGC
CTGTTCGGACTGGTCGGGCAGGGCGATACGCTGGCGATCCGTCCGCAGCTGCCGTCGCATTGGCCGCACGCGCGTGCGAG
GCGCCAGTTCCGTGGTGCGGACTTCGACGTCACGCTGACGCGCGAGCCGGGTCGCACCGCGATGGAGGTACTGGTCGATG
GCGCGCTCTGTCCGGAGCAGCGCATCGGCAACATCGCGCGCGGGCAGGTGTATCGGGTCGAGGTCCGGTTGCCCGGATGA

Upstream 100 bases:

>100_bases
CCTGGACCATGCGCTTTTATCCGCTGGACGACGGGCTGTTGAACCGCATCCAGCTCGAACTGGCCGCGCGCAAGCGCGAC
GAACCGGAGCACCCCTGACC

Downstream 100 bases:

>100_bases
GTCCGCGGGCCGGTCGCCGCCTCGGTGTTGGCGGCGGCAATAGACGGCTGAAAGCGGCTGGAGCGCGCTTGCGACGCTCT
CCAGCTGGCTTGCGTCAGCG

Product: NdvB protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 799; Mature: 798

Protein sequence:

>799_residues
MSATPPATSDALSSLMAPSADGARYALYSPTAMPNAGGFLWNRRMMVQLTCRGYATGQFMQPEPSKYAHAPMLEARNFMM
PEQPYYAHHPGRFFYLKDEDTGALYSVPHEPVRAQPQAFEFSAGKHDVRWRVRHDDIVVELCVSLPTDDAVELWECRVHN
LSGRARRLSLYAYFPVGYMSWMHQSGGYEPALGAIVCRSVAPYQKVDDYFRQRDFKDCTFLLHEQTPVAWDAQQMAFEGE
GGLHAPSAVQAEQLGNHDAHYETPAAALQYRLTLDADAASVYRFAFGPAKDDAEIAALRARYLSEAGFAQAAREYAEYLQ
AGRGCVQIATPDAALDNLVNHWLPRQVFYHGDVNRLTTDPQTRNYLQDHMGMAYLQPATARAALLHALSQQEPSGAMPDG
ILLVEGAELKYINQVPHTDHCVWLPIFLSAYLAETGDTSILDTLVETHDGQRLSVAERLDAAMQWLLDARDARGLSFIAQ
GDWCDPMNMVGWRGKGVSGWLTVATAYAVRLWSEICTAQGRSAQAQAFGEAVAVINADANRELWDGNWYARGITDDGVRF
GIADDVEGRIYLNPQSFALLAGTADAQQRAALLEAVREQLHTPYGPVMLAPAYTHMRDDVGRLTQKWPGAAENGAVYNHA
AAFYLYSLYQIGEADRAWEILRALLPGPTREDVLQRGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLDG
LFGLVGQGDTLAIRPQLPSHWPHARARRQFRGADFDVTLTREPGRTAMEVLVDGALCPEQRIGNIARGQVYRVEVRLPG

Sequences:

>Translated_799_residues
MSATPPATSDALSSLMAPSADGARYALYSPTAMPNAGGFLWNRRMMVQLTCRGYATGQFMQPEPSKYAHAPMLEARNFMM
PEQPYYAHHPGRFFYLKDEDTGALYSVPHEPVRAQPQAFEFSAGKHDVRWRVRHDDIVVELCVSLPTDDAVELWECRVHN
LSGRARRLSLYAYFPVGYMSWMHQSGGYEPALGAIVCRSVAPYQKVDDYFRQRDFKDCTFLLHEQTPVAWDAQQMAFEGE
GGLHAPSAVQAEQLGNHDAHYETPAAALQYRLTLDADAASVYRFAFGPAKDDAEIAALRARYLSEAGFAQAAREYAEYLQ
AGRGCVQIATPDAALDNLVNHWLPRQVFYHGDVNRLTTDPQTRNYLQDHMGMAYLQPATARAALLHALSQQEPSGAMPDG
ILLVEGAELKYINQVPHTDHCVWLPIFLSAYLAETGDTSILDTLVETHDGQRLSVAERLDAAMQWLLDARDARGLSFIAQ
GDWCDPMNMVGWRGKGVSGWLTVATAYAVRLWSEICTAQGRSAQAQAFGEAVAVINADANRELWDGNWYARGITDDGVRF
GIADDVEGRIYLNPQSFALLAGTADAQQRAALLEAVREQLHTPYGPVMLAPAYTHMRDDVGRLTQKWPGAAENGAVYNHA
AAFYLYSLYQIGEADRAWEILRALLPGPTREDVLQRGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLDG
LFGLVGQGDTLAIRPQLPSHWPHARARRQFRGADFDVTLTREPGRTAMEVLVDGALCPEQRIGNIARGQVYRVEVRLPG
>Mature_798_residues
SATPPATSDALSSLMAPSADGARYALYSPTAMPNAGGFLWNRRMMVQLTCRGYATGQFMQPEPSKYAHAPMLEARNFMMP
EQPYYAHHPGRFFYLKDEDTGALYSVPHEPVRAQPQAFEFSAGKHDVRWRVRHDDIVVELCVSLPTDDAVELWECRVHNL
SGRARRLSLYAYFPVGYMSWMHQSGGYEPALGAIVCRSVAPYQKVDDYFRQRDFKDCTFLLHEQTPVAWDAQQMAFEGEG
GLHAPSAVQAEQLGNHDAHYETPAAALQYRLTLDADAASVYRFAFGPAKDDAEIAALRARYLSEAGFAQAAREYAEYLQA
GRGCVQIATPDAALDNLVNHWLPRQVFYHGDVNRLTTDPQTRNYLQDHMGMAYLQPATARAALLHALSQQEPSGAMPDGI
LLVEGAELKYINQVPHTDHCVWLPIFLSAYLAETGDTSILDTLVETHDGQRLSVAERLDAAMQWLLDARDARGLSFIAQG
DWCDPMNMVGWRGKGVSGWLTVATAYAVRLWSEICTAQGRSAQAQAFGEAVAVINADANRELWDGNWYARGITDDGVRFG
IADDVEGRIYLNPQSFALLAGTADAQQRAALLEAVREQLHTPYGPVMLAPAYTHMRDDVGRLTQKWPGAAENGAVYNHAA
AFYLYSLYQIGEADRAWEILRALLPGPTREDVLQRGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLDGL
FGLVGQGDTLAIRPQLPSHWPHARARRQFRGADFDVTLTREPGRTAMEVLVDGALCPEQRIGNIARGQVYRVEVRLPG

Specific function: Involved in the production of beta-(1,2)-glucan. It is involved not only in invasion but also in bacteroid development [H]

COG id: COG3459

COG function: function code G; Cellobiose phosphorylase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens ChvB [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008928
- InterPro:   IPR009342
- InterPro:   IPR019282
- InterPro:   IPR021478
- InterPro:   IPR011013
- InterPro:   IPR010383
- InterPro:   IPR010403 [H]

Pfam domain/function: PF06204 CBM_X; PF10091 DUF2329; PF11329 DUF3131; PF06165 Glyco_transf_36; PF06205 GT36_AF [H]

EC number: NA

Molecular weight: Translated: 88892; Mature: 88761

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATPPATSDALSSLMAPSADGARYALYSPTAMPNAGGFLWNRRMMVQLTCRGYATGQFM
CCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEECCEEEEEEEECCCCCCCCC
QPEPSKYAHAPMLEARNFMMPEQPYYAHHPGRFFYLKDEDTGALYSVPHEPVRAQPQAFE
CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCEE
FSAGKHDVRWRVRHDDIVVELCVSLPTDDAVELWECRVHNLSGRARRLSLYAYFPVGYMS
ECCCCCCEEEEEECCCEEEHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCHHHHH
WMHQSGGYEPALGAIVCRSVAPYQKVDDYFRQRDFKDCTFLLHEQTPVAWDAQQMAFEGE
HHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHEECCC
GGLHAPSAVQAEQLGNHDAHYETPAAALQYRLTLDADAASVYRFAFGPAKDDAEIAALRA
CCCCCCCCHHHHHCCCCCCCCCCCHHHEEEEEEECCCHHHHHHEECCCCCCCHHHHHHHH
RYLSEAGFAQAAREYAEYLQAGRGCVQIATPDAALDNLVNHWLPRQVFYHGDVNRLTTDP
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCHHEEEECCCCCCCCCC
QTRNYLQDHMGMAYLQPATARAALLHALSQQEPSGAMPDGILLVEGAELKYINQVPHTDH
HHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEECCCCCCCC
CVWLPIFLSAYLAETGDTSILDTLVETHDGQRLSVAERLDAAMQWLLDARDARGLSFIAQ
EEHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEC
GDWCDPMNMVGWRGKGVSGWLTVATAYAVRLWSEICTAQGRSAQAQAFGEAVAVINADAN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCEEEEEECCCC
RELWDGNWYARGITDDGVRFGIADDVEGRIYLNPQSFALLAGTADAQQRAALLEAVREQL
CCEECCCEEEECCCCCCEEECCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHHH
HTPYGPVMLAPAYTHMRDDVGRLTQKWPGAAENGAVYNHAAAFYLYSLYQIGEADRAWEI
CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
LRALLPGPTREDVLQRGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLDG
HHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
LFGLVGQGDTLAIRPQLPSHWPHARARRQFRGADFDVTLTREPGRTAMEVLVDGALCPEQ
HHHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCHH
RIGNIARGQVYRVEVRLPG
HCCCCCCCEEEEEEEECCC
>Mature Secondary Structure 
SATPPATSDALSSLMAPSADGARYALYSPTAMPNAGGFLWNRRMMVQLTCRGYATGQFM
CCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEECCEEEEEEEECCCCCCCCC
QPEPSKYAHAPMLEARNFMMPEQPYYAHHPGRFFYLKDEDTGALYSVPHEPVRAQPQAFE
CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCEE
FSAGKHDVRWRVRHDDIVVELCVSLPTDDAVELWECRVHNLSGRARRLSLYAYFPVGYMS
ECCCCCCEEEEEECCCEEEHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCHHHHH
WMHQSGGYEPALGAIVCRSVAPYQKVDDYFRQRDFKDCTFLLHEQTPVAWDAQQMAFEGE
HHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHEECCC
GGLHAPSAVQAEQLGNHDAHYETPAAALQYRLTLDADAASVYRFAFGPAKDDAEIAALRA
CCCCCCCCHHHHHCCCCCCCCCCCHHHEEEEEEECCCHHHHHHEECCCCCCCHHHHHHHH
RYLSEAGFAQAAREYAEYLQAGRGCVQIATPDAALDNLVNHWLPRQVFYHGDVNRLTTDP
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCHHEEEECCCCCCCCCC
QTRNYLQDHMGMAYLQPATARAALLHALSQQEPSGAMPDGILLVEGAELKYINQVPHTDH
HHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEECCCCCCCC
CVWLPIFLSAYLAETGDTSILDTLVETHDGQRLSVAERLDAAMQWLLDARDARGLSFIAQ
EEHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEC
GDWCDPMNMVGWRGKGVSGWLTVATAYAVRLWSEICTAQGRSAQAQAFGEAVAVINADAN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCEEEEEECCCC
RELWDGNWYARGITDDGVRFGIADDVEGRIYLNPQSFALLAGTADAQQRAALLEAVREQL
CCEECCCEEEECCCCCCEEECCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHHH
HTPYGPVMLAPAYTHMRDDVGRLTQKWPGAAENGAVYNHAAAFYLYSLYQIGEADRAWEI
CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
LRALLPGPTREDVLQRGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLDG
HHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
LFGLVGQGDTLAIRPQLPSHWPHARARRQFRGADFDVTLTREPGRTAMEVLVDGALCPEQ
HHHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCHH
RIGNIARGQVYRVEVRLPG
HCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2154461; 11481430 [H]