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The map label for this gene is rpoE8

Identifier: 78049777

GI number: 78049777

Start: 4847738

End: 4848304

Strand: Reverse

Name: rpoE8

Synonym: XCV4221

Alternate gene names: NA

Gene position: 4848304-4847738 (Counterclockwise)

Preceding gene: 78049783

Following gene: 78049776

Centisome position: 93.62

GC content: 68.78

Gene sequence:

>567_bases
GTGTCCACGCAGGCGAGATGGGCTTGGATGTCCGAGCTGCCGATCACCGAGTTATTGCAGGCCTGGCAGCGCGACGAACC
CGGCGCGGGCGACGCCTTGGCGCGCCAGGTCTATGACGTGTTGCGCGCCACCGCCATGCGCGAGCTGCGTCGCGACGGGC
GCGCTGGCTTGCAGGCGACCGAGCTGGTGCACGAGGCTTGGATGCGGCTGGAACAGGGCCAGCAGGGTTTTCGTTCGCGG
GCGCACTTCTATTCGGTGGCTGCGCTGCAGATGCGCCACCTGTTGGTGGATCTGGCGCGCCAGCAGGCCAGCGCCAAACG
GTTGGGGCAGGCGGTGACGCTGACCCTCAGCCTGTCCGACGGCGCCGCACGGCCGGAGGCATTGATGCTGGTGGCCGATG
CCTTCGACAAGCTGGCCCAGGTGGACGAGCGCAAGGCCCGTGCATTCGCATTGACCGAGCTGGTGGGCTTCAGCGTGGCC
GAGGCCGCCGAACAGCTGGAGGTGTCGGTGCCGACGCTGGAGCGCGATCTGCGCTTTGCCAGGGTGTGGCTGGCGGCGCA
GCTGTGA

Upstream 100 bases:

>100_bases
CGCTACCTGCCTGGGCTGCTCCGCGCTGTCGGGGCACGGTGATTGGGGCCGAATGATTACCGGTGGCGTGTTCCGCGTCG
GTGCCAATGCGGGATACTGC

Downstream 100 bases:

>100_bases
GCCTGGCCGCCACCGCGTGGCAACGTCTGGAAGCCTTGTTTCATCAGGCCTGCCAGTTGCCTGCCGCCGAGCGCGAGGCA
TTTGCGCGCGCGCAGGCCGG

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma Factor ECF-Like Family Protein; RNA Polymerase ECF-Type Sigma Factor; Sigma Factor; RNA Polymerase Sigma Factor; ECF Sigma Factor Family Protein; Extracytoplasmic Sigma Factor ECF; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSTQARWAWMSELPITELLQAWQRDEPGAGDALARQVYDVLRATAMRELRRDGRAGLQATELVHEAWMRLEQGQQGFRSR
AHFYSVAALQMRHLLVDLARQQASAKRLGQAVTLTLSLSDGAARPEALMLVADAFDKLAQVDERKARAFALTELVGFSVA
EAAEQLEVSVPTLERDLRFARVWLAAQL

Sequences:

>Translated_188_residues
MSTQARWAWMSELPITELLQAWQRDEPGAGDALARQVYDVLRATAMRELRRDGRAGLQATELVHEAWMRLEQGQQGFRSR
AHFYSVAALQMRHLLVDLARQQASAKRLGQAVTLTLSLSDGAARPEALMLVADAFDKLAQVDERKARAFALTELVGFSVA
EAAEQLEVSVPTLERDLRFARVWLAAQL
>Mature_187_residues
STQARWAWMSELPITELLQAWQRDEPGAGDALARQVYDVLRATAMRELRRDGRAGLQATELVHEAWMRLEQGQQGFRSRA
HFYSVAALQMRHLLVDLARQQASAKRLGQAVTLTLSLSDGAARPEALMLVADAFDKLAQVDERKARAFALTELVGFSVAE
AAEQLEVSVPTLERDLRFARVWLAAQL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21043; Mature: 20912

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTQARWAWMSELPITELLQAWQRDEPGAGDALARQVYDVLRATAMRELRRDGRAGLQAT
CCCCCHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
ELVHEAWMRLEQGQQGFRSRAHFYSVAALQMRHLLVDLARQQASAKRLGQAVTLTLSLSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
GAARPEALMLVADAFDKLAQVDERKARAFALTELVGFSVAEAAEQLEVSVPTLERDLRFA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RVWLAAQL
HHHHHHCC
>Mature Secondary Structure 
STQARWAWMSELPITELLQAWQRDEPGAGDALARQVYDVLRATAMRELRRDGRAGLQAT
CCCCHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
ELVHEAWMRLEQGQQGFRSRAHFYSVAALQMRHLLVDLARQQASAKRLGQAVTLTLSLSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
GAARPEALMLVADAFDKLAQVDERKARAFALTELVGFSVAEAAEQLEVSVPTLERDLRFA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RVWLAAQL
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA