Click here to switch to the map view.

The map label for this gene is ydbC [H]

Identifier: 78049768

GI number: 78049768

Start: 4836922

End: 4837812

Strand: Reverse

Name: ydbC [H]

Synonym: XCV4212

Alternate gene names: 78049768

Gene position: 4837812-4836922 (Counterclockwise)

Preceding gene: 78049770

Following gene: 78049767

Centisome position: 93.42

GC content: 63.08

Gene sequence:

>891_bases
ATGAACAGCGGCAAGCCCCTTGGCGGCACATTGACCCTGCCCGGCACCACCCTTGCCATCAATCGGATGGGTTACGGAAC
CATGCAGTTACCCGGACCGCATGTCTGGGGACCTCCGCGCGACAAGGCATCGGCCTTGTCGGTGTTGCGCGAAGCAATCG
CCCTGGGCGCCAACCACATCGACACCGCGCAGTTCTACGGCCCCGATGTGTCCAACGCACTCATCCGCGAAGCACTGCAT
CCCTATCGCAGCGATCTGGTCATCGTGACCAAGATCGGTTTCAGCCGTGGCCCCGATGCTTCGTGGAATATCGATGTGTC
GCCTGCAAGCCTGAGGCGGCAGGTGCATGAAAACCTGCAGAGCCTCGGCCTGGAGACACTGGACGTGGTCAACGTGAGGC
TGGGCACGGCAATGGACACCGACGAGCGTTCGATCGCCGAACCGGTCGCGTGCCTGGCCGAGCTGCAACGCGAGGGCCTC
GTACGCCACATCGGCTTGAGCAACGTCACTGCGCGACAGTTCGAACAAGCGCAAACACTGGCCAGCATCGTCTGCGTTCA
AAACCAGTACAACCTGGTCAAGCGCGACGACGACGCCTTCATCGAGATGCTCGCGCAACAGGGTGTGGCCTATGTTCCGT
TCTTTCCGCTCGGCGGCTTTTCGCCCCTGCAGTCGGAGCTGCTGTCGGGCGTTGCCAGGCAGGTAGGCGCGACGCCGAAG
CAGGTTGCACTTGCATGGCTGCTGCAGCGCTCGCCCAACATCCTGGTCATCGCGGGAACATCGTCGGTGCCGCACCTGCG
CGAGAACTTCGCATCCGCCGAGCTGAGCCTGTCGGCCGAGCAGGTCGCAACGCTCGATGGCATCGCTGCCGAGGCCAGTG
GCGCTCAATAG

Upstream 100 bases:

>100_bases
GCTTCTTCAAGCCACGCGAAAGATCCCGTCGCAATCTCGGCGTGTCCCAACACACGCGGCGGTTTGGCACATCACCCGGA
TACACACCAAAAGGATTCCC

Downstream 100 bases:

>100_bases
GAAGGTGGGTGGCAACATGCCGATGGAGATCGGCCAACCCGTCTCCGCGCAATCGCCAGGCGGGTGCCTACGCACCATCC
AGGCCGCCCAGACGACTCGC

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNSGKPLGGTLTLPGTTLAINRMGYGTMQLPGPHVWGPPRDKASALSVLREAIALGANHIDTAQFYGPDVSNALIREALH
PYRSDLVIVTKIGFSRGPDASWNIDVSPASLRRQVHENLQSLGLETLDVVNVRLGTAMDTDERSIAEPVACLAELQREGL
VRHIGLSNVTARQFEQAQTLASIVCVQNQYNLVKRDDDAFIEMLAQQGVAYVPFFPLGGFSPLQSELLSGVARQVGATPK
QVALAWLLQRSPNILVIAGTSSVPHLRENFASAELSLSAEQVATLDGIAAEASGAQ

Sequences:

>Translated_296_residues
MNSGKPLGGTLTLPGTTLAINRMGYGTMQLPGPHVWGPPRDKASALSVLREAIALGANHIDTAQFYGPDVSNALIREALH
PYRSDLVIVTKIGFSRGPDASWNIDVSPASLRRQVHENLQSLGLETLDVVNVRLGTAMDTDERSIAEPVACLAELQREGL
VRHIGLSNVTARQFEQAQTLASIVCVQNQYNLVKRDDDAFIEMLAQQGVAYVPFFPLGGFSPLQSELLSGVARQVGATPK
QVALAWLLQRSPNILVIAGTSSVPHLRENFASAELSLSAEQVATLDGIAAEASGAQ
>Mature_296_residues
MNSGKPLGGTLTLPGTTLAINRMGYGTMQLPGPHVWGPPRDKASALSVLREAIALGANHIDTAQFYGPDVSNALIREALH
PYRSDLVIVTKIGFSRGPDASWNIDVSPASLRRQVHENLQSLGLETLDVVNVRLGTAMDTDERSIAEPVACLAELQREGL
VRHIGLSNVTARQFEQAQTLASIVCVQNQYNLVKRDDDAFIEMLAQQGVAYVPFFPLGGFSPLQSELLSGVARQVGATPK
QVALAWLLQRSPNILVIAGTSSVPHLRENFASAELSLSAEQVATLDGIAAEASGAQ

Specific function: Unknown

COG id: COG0667

COG function: function code C; Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldo/keto reductase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787674, Length=277, Percent_Identity=62.4548736462094, Blast_Score=352, Evalue=2e-98,
Organism=Escherichia coli, GI87081735, Length=316, Percent_Identity=29.1139240506329, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1788070, Length=323, Percent_Identity=27.2445820433437, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789199, Length=344, Percent_Identity=27.0348837209302, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789375, Length=302, Percent_Identity=26.4900662251656, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786400, Length=275, Percent_Identity=28.7272727272727, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788081, Length=275, Percent_Identity=25.4545454545455, Blast_Score=67, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24663317, Length=268, Percent_Identity=24.6268656716418, Blast_Score=72, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001395
- InterPro:   IPR023210 [H]

Pfam domain/function: PF00248 Aldo_ket_red [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31653; Mature: 31653

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSGKPLGGTLTLPGTTLAINRMGYGTMQLPGPHVWGPPRDKASALSVLREAIALGANHI
CCCCCCCCCEEECCCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
DTAQFYGPDVSNALIREALHPYRSDLVIVTKIGFSRGPDASWNIDVSPASLRRQVHENLQ
CCHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHH
SLGLETLDVVNVRLGTAMDTDERSIAEPVACLAELQREGLVRHIGLSNVTARQFEQAQTL
HCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHH
ASIVCVQNQYNLVKRDDDAFIEMLAQQGVAYVPFFPLGGFSPLQSELLSGVARQVGATPK
HHHHHHHCCCCCEECCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCHH
QVALAWLLQRSPNILVIAGTSSVPHLRENFASAELSLSAEQVATLDGIAAEASGAQ
HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNSGKPLGGTLTLPGTTLAINRMGYGTMQLPGPHVWGPPRDKASALSVLREAIALGANHI
CCCCCCCCCEEECCCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
DTAQFYGPDVSNALIREALHPYRSDLVIVTKIGFSRGPDASWNIDVSPASLRRQVHENLQ
CCHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHH
SLGLETLDVVNVRLGTAMDTDERSIAEPVACLAELQREGLVRHIGLSNVTARQFEQAQTL
HCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHH
ASIVCVQNQYNLVKRDDDAFIEMLAQQGVAYVPFFPLGGFSPLQSELLSGVARQVGATPK
HHHHHHHCCCCCEECCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCHH
QVALAWLLQRSPNILVIAGTSSVPHLRENFASAELSLSAEQVATLDGIAAEASGAQ
HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1665988; 9097039; 9278503; 9748275 [H]