| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
Click here to switch to the map view.
The map label for this gene is 78049690
Identifier: 78049690
GI number: 78049690
Start: 4729794
End: 4731623
Strand: Reverse
Name: 78049690
Synonym: XCV4134
Alternate gene names: NA
Gene position: 4731623-4729794 (Counterclockwise)
Preceding gene: 78049691
Following gene: 78049688
Centisome position: 91.37
GC content: 65.85
Gene sequence:
>1830_bases ATGGGTAGGGTCGCGCTACTCAATTCGCGGATCTGCCTCATGAAGCCACTCGTTCTCGCCGTTGCGCTGGCGCTCGGTTC CTCGTTGCCGTTGCAGGCACAGACCGGCAAGACTGCGCCGACACAACCCGCCAGCCCGGCCTGGGTGCAGACCAGCAACG GCTATGCGCAGATCCTGCTCAATGCGCAGGCGCCGTTCCAGCCCGAATACGCCAGCTTCTTCGGTGTGCCCGGCTACGAC GATCAGGTCGTCGACCTCGGCCCGGACAACGCCGCGCGCTATCGCGATGCCATGCGCAAGGCGCGCGCCACGCTGCAAAC GAAGTTGACCACCGAGCGCGATGCCAACGTGCGCCAGGACCTGCAGATCATGATCGGCGCGGCCGAGCAGAACATCGAAG GCAGCGAGCTCAACGAACGGTATCTGTTGCCCTGGAGCGATGCTCCCGAGGCGGTTTTCAGTGGTCTCAACGGTCTGCTC TCCGACCAGACCGTGCCCGAGCGCCGCGCCAAGGCGCTGGATCGCCTCAAGCGTTACGTCGGCCTGGTACCGGGAAGCAC GCCCACCACCACGCTGGCGCGCCAGCGCTACGAGGAAAAACTGAGCAACAAGGCCCTGCTGCAGCCCACCCAGCGCGAAG TAGAGCAGGCGCTGGCCAATGTGGACACCTACGTCGCCGGTATTGGCGAGCTGTTCGCCAAGTACAAGATCGCCGGCGCC GACGAGGCGCTCAAGGCCATGTCCACGCAACTGAAGGACTACGCCGCGTGGACCCGCGCCACCGTGCTACCCAAGGCGCG CAAGGACACTCGCCTGCCCGAGCCGCTTTACGCTTTCCAGCTCAAGCAGGTCGGGATCGATATCGCGCCGCAGCAGCTGA TCCAGCGCGCGCAACTGGAGTTCATGGAGACCCGTTCGGCCATGCGCCAACTGGCGCCGCTGGTGGCCAAGGCCAAGGGC GTGCAGGGCGGCGATTATGTGCAGGTGATCCGCGCCCTCAAGGGCAACAAGATCGCCGACGACCAGTTGGAAACCCACTA CCGCGGCGTGATCGATCAGATCGACCCGATCATCCGCCAGCAGCGCATCGTCGATGTGCCTAACCGCCCGATGCAGATGC GCCTGGGCAGCGCCGCCGAAAGCGCCGCGCAACCGGCCCCGCACTTCCTGCCGGCCCCGTTGATCGGCAATACCGGCCAG CAGGGCCAGTTCGTGTTGCCGCTGGGCAACCCGACCGCCGATGGCGCCAAGAAAGAGCAATACGACGACTTCAACTTCGG CTCGGCCGCCTGGACGCTCAGCGCCCACGAAGGCCGCCCCGGCCACGAACTGCAGTTCACCGCCATGGTCGAACGCGGCG TCTCGCTGGCGCGCAGTATGTTCGCCTTCAACTCGGTCAACGTCGAAGGCTGGGCGCTGTATGCCGAAGCAGAAATGGTG CCGTACGAACCGCTCGACGGCCAGCTGATCGCCCTGCAGTTCCGCCTGCTGCGCGCCGCCCGCGCCATGCTCGACCCGAT GCTCAACCTGGGCCTGATCGACCGCGAACGCGCGCGCCAGGTACTGGAAGACGACGTCGGCCTTTCGCCGGCCATGACCC GCCAGGAACTGGACCGCTACACCGTCCGCGCCCCCGGACAGGCCGGCAGCTACTTCTACGGCTATACCCGCATCCTCGAA CTGCGCATGCGCACCGAACTGGCCCTGGGCAAAAAGTTCGACCGCCTGGCCTTCAACAACTTCCTGCTCGACCAGGGCCT GCTGCCACCGGATCAGCTGGCCAAGGCGGTGGAGACGCAGTTCATTCCGGCGCAACAGGCCAAGCGCTGA
Upstream 100 bases:
>100_bases GCGTCGATGGCGCCCGGATCGATGTGTTACCTGTTGCCGCCTCGCCGCCGCCGCCGCCCCGCCGGCCATGACCTAAGGCA GATTGCCGCGGCCGCTGCAG
Downstream 100 bases:
>100_bases CCAGCTCCGTGGAGTTCAAAAAAACAGGGCGCGATAAAAGGCCGCAAACAGCCTTCCGTCGCGCCCTGGCGCAGTGATGC GGGTGATTCTTTGCGGGCTT
Product: putative secreted protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 609; Mature: 608
Protein sequence:
>609_residues MGRVALLNSRICLMKPLVLAVALALGSSLPLQAQTGKTAPTQPASPAWVQTSNGYAQILLNAQAPFQPEYASFFGVPGYD DQVVDLGPDNAARYRDAMRKARATLQTKLTTERDANVRQDLQIMIGAAEQNIEGSELNERYLLPWSDAPEAVFSGLNGLL SDQTVPERRAKALDRLKRYVGLVPGSTPTTTLARQRYEEKLSNKALLQPTQREVEQALANVDTYVAGIGELFAKYKIAGA DEALKAMSTQLKDYAAWTRATVLPKARKDTRLPEPLYAFQLKQVGIDIAPQQLIQRAQLEFMETRSAMRQLAPLVAKAKG VQGGDYVQVIRALKGNKIADDQLETHYRGVIDQIDPIIRQQRIVDVPNRPMQMRLGSAAESAAQPAPHFLPAPLIGNTGQ QGQFVLPLGNPTADGAKKEQYDDFNFGSAAWTLSAHEGRPGHELQFTAMVERGVSLARSMFAFNSVNVEGWALYAEAEMV PYEPLDGQLIALQFRLLRAARAMLDPMLNLGLIDRERARQVLEDDVGLSPAMTRQELDRYTVRAPGQAGSYFYGYTRILE LRMRTELALGKKFDRLAFNNFLLDQGLLPPDQLAKAVETQFIPAQQAKR
Sequences:
>Translated_609_residues MGRVALLNSRICLMKPLVLAVALALGSSLPLQAQTGKTAPTQPASPAWVQTSNGYAQILLNAQAPFQPEYASFFGVPGYD DQVVDLGPDNAARYRDAMRKARATLQTKLTTERDANVRQDLQIMIGAAEQNIEGSELNERYLLPWSDAPEAVFSGLNGLL SDQTVPERRAKALDRLKRYVGLVPGSTPTTTLARQRYEEKLSNKALLQPTQREVEQALANVDTYVAGIGELFAKYKIAGA DEALKAMSTQLKDYAAWTRATVLPKARKDTRLPEPLYAFQLKQVGIDIAPQQLIQRAQLEFMETRSAMRQLAPLVAKAKG VQGGDYVQVIRALKGNKIADDQLETHYRGVIDQIDPIIRQQRIVDVPNRPMQMRLGSAAESAAQPAPHFLPAPLIGNTGQ QGQFVLPLGNPTADGAKKEQYDDFNFGSAAWTLSAHEGRPGHELQFTAMVERGVSLARSMFAFNSVNVEGWALYAEAEMV PYEPLDGQLIALQFRLLRAARAMLDPMLNLGLIDRERARQVLEDDVGLSPAMTRQELDRYTVRAPGQAGSYFYGYTRILE LRMRTELALGKKFDRLAFNNFLLDQGLLPPDQLAKAVETQFIPAQQAKR >Mature_608_residues GRVALLNSRICLMKPLVLAVALALGSSLPLQAQTGKTAPTQPASPAWVQTSNGYAQILLNAQAPFQPEYASFFGVPGYDD QVVDLGPDNAARYRDAMRKARATLQTKLTTERDANVRQDLQIMIGAAEQNIEGSELNERYLLPWSDAPEAVFSGLNGLLS DQTVPERRAKALDRLKRYVGLVPGSTPTTTLARQRYEEKLSNKALLQPTQREVEQALANVDTYVAGIGELFAKYKIAGAD EALKAMSTQLKDYAAWTRATVLPKARKDTRLPEPLYAFQLKQVGIDIAPQQLIQRAQLEFMETRSAMRQLAPLVAKAKGV QGGDYVQVIRALKGNKIADDQLETHYRGVIDQIDPIIRQQRIVDVPNRPMQMRLGSAAESAAQPAPHFLPAPLIGNTGQQ GQFVLPLGNPTADGAKKEQYDDFNFGSAAWTLSAHEGRPGHELQFTAMVERGVSLARSMFAFNSVNVEGWALYAEAEMVP YEPLDGQLIALQFRLLRAARAMLDPMLNLGLIDRERARQVLEDDVGLSPAMTRQELDRYTVRAPGQAGSYFYGYTRILEL RMRTELALGKKFDRLAFNNFLLDQGLLPPDQLAKAVETQFIPAQQAKR
Specific function: Unknown
COG id: COG4805
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67362; Mature: 67231
Theoretical pI: Translated: 9.12; Mature: 9.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRVALLNSRICLMKPLVLAVALALGSSLPLQAQTGKTAPTQPASPAWVQTSNGYAQILL CCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEE NAQAPFQPEYASFFGVPGYDDQVVDLGPDNAARYRDAMRKARATLQTKLTTERDANVRQD ECCCCCCCCHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH LQIMIGAAEQNIEGSELNERYLLPWSDAPEAVFSGLNGLLSDQTVPERRAKALDRLKRYV HHHEEECHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH GLVPGSTPTTTLARQRYEEKLSNKALLQPTQREVEQALANVDTYVAGIGELFAKYKIAGA CCCCCCCCHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH DEALKAMSTQLKDYAAWTRATVLPKARKDTRLPEPLYAFQLKQVGIDIAPQQLIQRAQLE HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH FMETRSAMRQLAPLVAKAKGVQGGDYVQVIRALKGNKIADDQLETHYRGVIDQIDPIIRQ HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH QRIVDVPNRPMQMRLGSAAESAAQPAPHFLPAPLIGNTGQQGQFVLPLGNPTADGAKKEQ HHHCCCCCCCHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHC YDDFNFGSAAWTLSAHEGRPGHELQFTAMVERGVSLARSMFAFNSVNVEGWALYAEAEMV CCCCCCCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC PYEPLDGQLIALQFRLLRAARAMLDPMLNLGLIDRERARQVLEDDVGLSPAMTRQELDRY CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH TVRAPGQAGSYFYGYTRILELRMRTELALGKKFDRLAFNNFLLDQGLLPPDQLAKAVETQ EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH FIPAQQAKR CCCHHHCCC >Mature Secondary Structure GRVALLNSRICLMKPLVLAVALALGSSLPLQAQTGKTAPTQPASPAWVQTSNGYAQILL CCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEE NAQAPFQPEYASFFGVPGYDDQVVDLGPDNAARYRDAMRKARATLQTKLTTERDANVRQD ECCCCCCCCHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH LQIMIGAAEQNIEGSELNERYLLPWSDAPEAVFSGLNGLLSDQTVPERRAKALDRLKRYV HHHEEECHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH GLVPGSTPTTTLARQRYEEKLSNKALLQPTQREVEQALANVDTYVAGIGELFAKYKIAGA CCCCCCCCHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH DEALKAMSTQLKDYAAWTRATVLPKARKDTRLPEPLYAFQLKQVGIDIAPQQLIQRAQLE HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH FMETRSAMRQLAPLVAKAKGVQGGDYVQVIRALKGNKIADDQLETHYRGVIDQIDPIIRQ HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH QRIVDVPNRPMQMRLGSAAESAAQPAPHFLPAPLIGNTGQQGQFVLPLGNPTADGAKKEQ HHHCCCCCCCHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHC YDDFNFGSAAWTLSAHEGRPGHELQFTAMVERGVSLARSMFAFNSVNVEGWALYAEAEMV CCCCCCCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC PYEPLDGQLIALQFRLLRAARAMLDPMLNLGLIDRERARQVLEDDVGLSPAMTRQELDRY CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH TVRAPGQAGSYFYGYTRILELRMRTELALGKKFDRLAFNNFLLDQGLLPPDQLAKAVETQ EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH FIPAQQAKR CCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA