Click here to switch to the map view.

The map label for this gene is 78049629

Identifier: 78049629

GI number: 78049629

Start: 4669293

End: 4670144

Strand: Reverse

Name: 78049629

Synonym: XCV4073

Alternate gene names: NA

Gene position: 4670144-4669293 (Counterclockwise)

Preceding gene: 78049637

Following gene: 78049619

Centisome position: 90.18

GC content: 65.38

Gene sequence:

>852_bases
ATGAGCAACGGCAATGGCGTAACGGCAACCCTGTCCGACGCCGTCGATAGCGTAAAAAGCACCGCCACCGAATTGACCGA
GACCATCGCCAGCACCGCCAGCGAGGCGGTCGCCAGCGTGCAGGAGGCCGCAGGCACGGCGGTGGAAGAGGTCAAGACGC
AGGTGGCCAAAGCGCGCAAGGCGGTGGTCAAGGTCGAAAAGAAGGTGGCCAAGAACGCCGGCACTGCGGCCACCGCAGTG
AAACGCAGCGTGGCCAAGACCAAACGCTCGCTGGCGGCCACCAAGGACGCTGCCAAGGACAAGCTGGTCGCCACCACGGA
AGCCGCCAAGCAGAAGCTCACCGCCACCAAGGACGCGGCCAAGCAAACGTTGACCTCGACCACGCAGGCCGCCAAGCAGA
AGTTGAGCAGCACCAGTGCCGCGGCCAGGAAGAAGATTACCGACACCAAGGCCACTACCAGGCGCAAGCTGGAAACCGCC
AAGGCCAATGCCAAGGCCGAAGCGGCCGCATTGAGTGCCAAGACGGCTGCCAAGAGCGCCGCACGCAAGACCGCCGTCGC
AACGGTGAACGCACGCACGGCGGCGAAGAAGGCAGCGAAGAAGGCAGTGGCCAAGCCGGCGGCAGCGACGAAGACGTTGC
TCAAGCCTGCAGCGAAGAAGGCGCCGGTCGCCAAGCAAACCGCGACCAGGCAGGCCGCAGTGAAGAAAGCCCCGCTCAAG
AAGGCCGTGACCAAGACCGCGCTGAGGAAAGCCGCCAAGGTGACCAAGACCCCGGCCACGCGTGCCGTGGCAAAGACCAC
CGCCGCGCGCAAGGCAGTGGGCAAGAAAGCGGCAAAGCGCGTCACGCGCTGA

Upstream 100 bases:

>100_bases
GGCCGGGCGTAGCGTCCGCTTGATCCGATGCCTGTTCAGCATGTTGCGTGCGGTCGCGCATCGCCTGAGTTTCCCGCACT
GACGCCCTTAAGGAGGGTCT

Downstream 100 bases:

>100_bases
GGTTGTCACGCTGCGGCGCAGGGTGCGATGTGCGGGTCGCCAGGTAGCCTGGAAGGCGTGCAACGCACGCGATAGGTGTC
ACTGACCCTGTGCAATGGTG

Product: histone H1-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSNGNGVTATLSDAVDSVKSTATELTETIASTASEAVASVQEAAGTAVEEVKTQVAKARKAVVKVEKKVAKNAGTAATAV
KRSVAKTKRSLAATKDAAKDKLVATTEAAKQKLTATKDAAKQTLTSTTQAAKQKLSSTSAAARKKITDTKATTRRKLETA
KANAKAEAAALSAKTAAKSAARKTAVATVNARTAAKKAAKKAVAKPAAATKTLLKPAAKKAPVAKQTATRQAAVKKAPLK
KAVTKTALRKAAKVTKTPATRAVAKTTAARKAVGKKAAKRVTR

Sequences:

>Translated_283_residues
MSNGNGVTATLSDAVDSVKSTATELTETIASTASEAVASVQEAAGTAVEEVKTQVAKARKAVVKVEKKVAKNAGTAATAV
KRSVAKTKRSLAATKDAAKDKLVATTEAAKQKLTATKDAAKQTLTSTTQAAKQKLSSTSAAARKKITDTKATTRRKLETA
KANAKAEAAALSAKTAAKSAARKTAVATVNARTAAKKAAKKAVAKPAAATKTLLKPAAKKAPVAKQTATRQAAVKKAPLK
KAVTKTALRKAAKVTKTPATRAVAKTTAARKAVGKKAAKRVTR
>Mature_282_residues
SNGNGVTATLSDAVDSVKSTATELTETIASTASEAVASVQEAAGTAVEEVKTQVAKARKAVVKVEKKVAKNAGTAATAVK
RSVAKTKRSLAATKDAAKDKLVATTEAAKQKLTATKDAAKQTLTSTTQAAKQKLSSTSAAARKKITDTKATTRRKLETAK
ANAKAEAAALSAKTAAKSAARKTAVATVNARTAAKKAAKKAVAKPAAATKTLLKPAAKKAPVAKQTATRQAAVKKAPLKK
AVTKTALRKAAKVTKTPATRAVAKTTAARKAVGKKAAKRVTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28794; Mature: 28662

Theoretical pI: Translated: 11.76; Mature: 11.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNGNGVTATLSDAVDSVKSTATELTETIASTASEAVASVQEAAGTAVEEVKTQVAKARK
CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVVKVEKKVAKNAGTAATAVKRSVAKTKRSLAATKDAAKDKLVATTEAAKQKLTATKDAA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQTLTSTTQAAKQKLSSTSAAARKKITDTKATTRRKLETAKANAKAEAAALSAKTAAKSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
ARKTAVATVNARTAAKKAAKKAVAKPAAATKTLLKPAAKKAPVAKQTATRQAAVKKAPLK
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KAVTKTALRKAAKVTKTPATRAVAKTTAARKAVGKKAAKRVTR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNGNGVTATLSDAVDSVKSTATELTETIASTASEAVASVQEAAGTAVEEVKTQVAKARK
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVVKVEKKVAKNAGTAATAVKRSVAKTKRSLAATKDAAKDKLVATTEAAKQKLTATKDAA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQTLTSTTQAAKQKLSSTSAAARKKITDTKATTRRKLETAKANAKAEAAALSAKTAAKSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
ARKTAVATVNARTAAKKAAKKAVAKPAAATKTLLKPAAKKAPVAKQTATRQAAVKKAPLK
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KAVTKTALRKAAKVTKTPATRAVAKTTAARKAVGKKAAKRVTR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA