Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 78049377

GI number: 78049377

Start: 4403394

End: 4404155

Strand: Reverse

Name: yadH [H]

Synonym: XCV3821

Alternate gene names: 78049377

Gene position: 4404155-4403394 (Counterclockwise)

Preceding gene: 78049378

Following gene: 78049375

Centisome position: 85.05

GC content: 61.55

Gene sequence:

>762_bases
ATGAACCTGCATGCGATTGCGGCGATCTACCGCTTCGAAATGGCGCGCGCCTTCCGCACGCTGACCCAGTCGATCGCCTC
GCCGGTGTTGTCGACCTCGCTGTACTTCGTGGTGTTCGGCGCGGCGATCGGTTCGCGCATGGGCGATATCGACGGCATCA
GCTACGGCGCCTTCATCATTCCCGGCCTGGTGATGTTGTCGCTGCTCAACGAGAGCATCTCCAATGCTTCGTTCGGCATC
TACATGCCGCGCTGGGCCGGCACCATCTACGAGGTGCTGTCCGCGCCGGTGGCGTGGTGGGAAATCGTGATCGGCTACGT
GGGCGCGGCGGCGACCAAATCGGTGATGCTGGGCTTGTTGATCCTGCTGACCGCACGGCTGTTCGTGCCATACGAGATCG
CGCACCCGGTGTGGATGCTGGGCTTTCTGGTGCTCACCGCGCTGACCTTCAGCCTGTTCGGTTTCATCATCGGCATCTGG
GCCGATGGCTTCGAAAAACTGCAGGTGATTCCGCTGATGGTGGTGACGCCGCTGACCTTCCTGGGCGGCAGTTTCTATTC
GATCAACATGCTGCCGCCGTTGTGGCAGAAGGTCACCCTGTTCAACCCGGTGGTGTATCTGATCAGCGGCTTTCGCTGGA
GTTTCTACGGCAAGGCCGATGTGCATATCGCGGTGAGCACCGGCATGACGTTCCTGTTCCTGCTGGTGTGCCTGGGCGTG
GTGGCGGCGATCTTCCGCAGCGGCTATCGGCTCAAGGCGTGA

Upstream 100 bases:

>100_bases
AGCAGGGCATCGACTTCAAGGACCTGCATTCCAGCGAGAGTTCGCTGGAAGAGATCTTCGTCAACCTGGTGCATGGCGCA
CGTCAGCAGGAGGTGCGCGC

Downstream 100 bases:

>100_bases
GTGGTGAAGGCAGTGGTGTTTGTCGCTGCAGTTTGGTGGATGCGGCCGGAGGTCCGGGTCGAACGGTGAGCGAGGCGAGG
GCGCGGTGCCCTCGCCGCTC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MNLHAIAAIYRFEMARAFRTLTQSIASPVLSTSLYFVVFGAAIGSRMGDIDGISYGAFIIPGLVMLSLLNESISNASFGI
YMPRWAGTIYEVLSAPVAWWEIVIGYVGAAATKSVMLGLLILLTARLFVPYEIAHPVWMLGFLVLTALTFSLFGFIIGIW
ADGFEKLQVIPLMVVTPLTFLGGSFYSINMLPPLWQKVTLFNPVVYLISGFRWSFYGKADVHIAVSTGMTFLFLLVCLGV
VAAIFRSGYRLKA

Sequences:

>Translated_253_residues
MNLHAIAAIYRFEMARAFRTLTQSIASPVLSTSLYFVVFGAAIGSRMGDIDGISYGAFIIPGLVMLSLLNESISNASFGI
YMPRWAGTIYEVLSAPVAWWEIVIGYVGAAATKSVMLGLLILLTARLFVPYEIAHPVWMLGFLVLTALTFSLFGFIIGIW
ADGFEKLQVIPLMVVTPLTFLGGSFYSINMLPPLWQKVTLFNPVVYLISGFRWSFYGKADVHIAVSTGMTFLFLLVCLGV
VAAIFRSGYRLKA
>Mature_253_residues
MNLHAIAAIYRFEMARAFRTLTQSIASPVLSTSLYFVVFGAAIGSRMGDIDGISYGAFIIPGLVMLSLLNESISNASFGI
YMPRWAGTIYEVLSAPVAWWEIVIGYVGAAATKSVMLGLLILLTARLFVPYEIAHPVWMLGFLVLTALTFSLFGFIIGIW
ADGFEKLQVIPLMVVTPLTFLGGSFYSINMLPPLWQKVTLFNPVVYLISGFRWSFYGKADVHIAVSTGMTFLFLLVCLGV
VAAIFRSGYRLKA

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=249, Percent_Identity=37.3493975903614, Blast_Score=184, Evalue=4e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 27810; Mature: 27810

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]