Click here to switch to the map view.

The map label for this gene is 78049337

Identifier: 78049337

GI number: 78049337

Start: 4365772

End: 4366332

Strand: Reverse

Name: 78049337

Synonym: XCV3781

Alternate gene names: NA

Gene position: 4366332-4365772 (Counterclockwise)

Preceding gene: 78049340

Following gene: 78049336

Centisome position: 84.32

GC content: 64.71

Gene sequence:

>561_bases
ATGCAGTCTGAAAAAGACATTCACGCAGATGCGATTGCCGTGACGAAAAAACACCTCAGCCAAGGCTTGCCAGCGCACGT
TCGCAGCGATTGCAGGGTGTTGCTGCTTGGTTCGATGCCCGGTGTCGCGTCACTGGAAGCCGCGCGTTACTACGCGCATC
CACGCAATCGTTTCTGGCCGCTGATGCATGCCCTATTGGGCATTGATGCGGCCGCAAGCTATGCATTGCGCTTGCAAGCA
TTGCTCGACCATCGCGTGGGCCTGTGGGACGTCATCGGCCAATGCGAGCGGCGCGGCAGTCTGGATACGTCCATTGTGGC
GGCGAGCATCGTGGTCAATCCGCTGCCCGCGTTGCTGGCCACGCTGCCGCAGCTGCGCATGGTGGCCTGCAATGGCGCTG
CGGCAGCACAGGCCTGGCGCCGGCATGTACAGCCGCGGCTATCGGCGCAGCTTTGCGCGCTGCCAGTCGTCGCGTTGCCA
TCCACCAGCCCGGCCAATGCGGCCTGGTCGCTGCCGCGGCTGGCCGCGGCCTGGCAGCCGCTGTGCGATGCGCTGCGCTA
G

Upstream 100 bases:

>100_bases
CGCGCCAAAACTATTCCTAAAAATCTGAATCCACGCCCACCTGCGGCCCGCTAAAATTTCGTTTGTTCAGGAATTCCCCC
AAGAAGGCCGTCGTTACGTC

Downstream 100 bases:

>100_bases
CCAAGGTGAGATGCCGCGAGGTCGATATGGAATGCCAGCGTCGCAGTGACCGCGCCGCCGTCGCGGTGCCCCCGCACTGA
TCGTTGACGCACGCTGCCTG

Product: hypothetical protein

Products: NA

Alternate protein names: Uracil-DNA Glycosylase Superfamily Protein; Uracil-DNA Glycosylase Superfamily; T/U Mismatch-Specific DNA Glycosylase; Mug GT/U Mismatch-Specific DNA Glycosylase; GT/U Mismatch-Specific DNA Glycosylase-Like Protein; G/U Mismatch-Specific DNA Glycosylase; DNA Glycosylase; G/U Mismatch-Specific Uracil-DNA Glycosylase; G-T/U Mismatch-Specific DNA Glycosylase-Like; Uracil DNA Glycosylase Superfamily; YjeF-Like Protein; GT/U Mismatch-Specific Uracil/Thymine DNA-Glycosylase

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MQSEKDIHADAIAVTKKHLSQGLPAHVRSDCRVLLLGSMPGVASLEAARYYAHPRNRFWPLMHALLGIDAAASYALRLQA
LLDHRVGLWDVIGQCERRGSLDTSIVAASIVVNPLPALLATLPQLRMVACNGAAAAQAWRRHVQPRLSAQLCALPVVALP
STSPANAAWSLPRLAAAWQPLCDALR

Sequences:

>Translated_186_residues
MQSEKDIHADAIAVTKKHLSQGLPAHVRSDCRVLLLGSMPGVASLEAARYYAHPRNRFWPLMHALLGIDAAASYALRLQA
LLDHRVGLWDVIGQCERRGSLDTSIVAASIVVNPLPALLATLPQLRMVACNGAAAAQAWRRHVQPRLSAQLCALPVVALP
STSPANAAWSLPRLAAAWQPLCDALR
>Mature_186_residues
MQSEKDIHADAIAVTKKHLSQGLPAHVRSDCRVLLLGSMPGVASLEAARYYAHPRNRFWPLMHALLGIDAAASYALRLQA
LLDHRVGLWDVIGQCERRGSLDTSIVAASIVVNPLPALLATLPQLRMVACNGAAAAQAWRRHVQPRLSAQLCALPVVALP
STSPANAAWSLPRLAAAWQPLCDALR

Specific function: Unknown

COG id: COG3663

COG function: function code L; G:T/U mismatch-specific DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20040; Mature: 20040

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSEKDIHADAIAVTKKHLSQGLPAHVRSDCRVLLLGSMPGVASLEAARYYAHPRNRFWP
CCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCHHHH
LMHALLGIDAAASYALRLQALLDHRVGLWDVIGQCERRGSLDTSIVAASIVVNPLPALLA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHH
TLPQLRMVACNGAAAAQAWRRHVQPRLSAQLCALPVVALPSTSPANAAWSLPRLAAAWQP
HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHEECCCCCCCCCHHCHHHHHHHHHH
LCDALR
HHHHCC
>Mature Secondary Structure
MQSEKDIHADAIAVTKKHLSQGLPAHVRSDCRVLLLGSMPGVASLEAARYYAHPRNRFWP
CCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCHHHH
LMHALLGIDAAASYALRLQALLDHRVGLWDVIGQCERRGSLDTSIVAASIVVNPLPALLA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHH
TLPQLRMVACNGAAAAQAWRRHVQPRLSAQLCALPVVALPSTSPANAAWSLPRLAAAWQP
HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHEECCCCCCCCCHHCHHHHHHHHHH
LCDALR
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA