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The map label for this gene is atpD [H]

Identifier: 78049323

GI number: 78049323

Start: 4351729

End: 4353135

Strand: Reverse

Name: atpD [H]

Synonym: XCV3767

Alternate gene names: 78049323

Gene position: 4353135-4351729 (Counterclockwise)

Preceding gene: 78049324

Following gene: 78049322

Centisome position: 84.06

GC content: 64.18

Gene sequence:

>1407_bases
ATGAGTCAGGGCAAGATCGTTCAGATCATCGGCGCGGTCGTCGACGTCGAGTTCCAGCGCAATGAAGTGCCGAAGGTGTA
CGACGCGCTGAAGGTCGAAGGCACCGCCATCACCCTGGAAGTGCAGCAGCAGCTGGGCGACGGCGTCGTGCGCACCATTG
CGCTCGGTTCCACCGACGGCCTCAAGCGCAACCTGGTCGCCACCAACACCGAACGCGCCATCTCGGTGCCGGTCGGCGCC
GGTACCCTGGGCCGCATCATGGACGTGCTGGGTCGCCCGATCGACGAGGCCGGCGACGTGCAGGCGTCCGATCATTGGGA
AATCCACCGTAGCGCCCCGTCCTACGAGGACCAGGCGTCGACCACCGAACTGCTGGAAACCGGCATCAAGGTGATCGACC
TGATGTGCCCGTTCGCCAAGGGCGGCAAGGTCGGCCTGTTCGGCGGCGCCGGCGTCGGCAAGACCGTCAACATGATGGAA
CTGATCAACAACATCGCCAAGGCGCACTCGGGTCTGTCGGTGTTCGCCGGCGTGGGCGAGCGTACCCGCGAGGGCAACGA
CTTCTACCACGAGATGAAGGACTCCAACGTCCTGGACAAGGTGGCGATGGTGTACGGCCAGATGAACGAGCCGCCGGGCA
ACCGTCTGCGCGTGGCGTTGACCGGCCTGACCATGGCCGAGTACTTCCGCGACGAGAAGGATGCCAGCGGCAAGGGCAAG
GACGTGCTGCTGTTCGTGGACAACATCTACCGCTACACGCTGGCCGGTACCGAAGTGTCGGCGCTGCTCGGCCGCATGCC
GTCGGCGGTGGGCTACCAGCCGACCCTGGCCGAGGAAATGGGCGTGCTGCAGGAGCGCATCACCTCGACCAAGAGCGGTT
CGATCACCTCGATCCAGGCCGTGTACGTGCCTGCGGACGACCTGACCGACCCGTCGCCGGCGACCACCTTCGCCCACCTG
GATTCCACCGTCACGCTGAGCCGTAACATCGCCTCGCTGGGTATCTACCCGGCGGTGGATCCGCTGGACTCGACCAGCCG
CCAGATGGATCCGCTGGTGATCGGCCACGAGCATTACGACACCGCCCAGCGCGTCCAGCAGACCTTGCAGAAGTACAAGG
AACTGAAGGACATCATCGCCATCCTGGGCATGGACGAGCTGAGCGAAGAAGACAAGCAGTCGGTGTCGCGCGCGCGCAAG
ATCGAGCGCTTCTTCAGCCAGCCTTTCCACGTGGCCGAAGTGTTCACCGGTTCGCCGGGCAAGTACGTGTCGCTGAAGGA
CACCATCCGCGGCTTCAAGGCGATCTGCGACGGCGAATACGACCACCTGCCGGAGCAGGCGTTCTACATGGTCGGCAGCA
TCGAAGAAGCGGTCGAGAAAGCCAACAAGATGAGCGCCAAGGCGTAA

Upstream 100 bases:

>100_bases
AAGTGCGCCCTTGCGAATCCCCAATCACGAATCCCAAATCACAAATTCCACGAGATGGCATCGGCCACTCGGACAGAACA
AAGCTAACCGGAGCAGCAAA

Downstream 100 bases:

>100_bases
GAGCCGGGATTTGGCATTCGGGATTCGGGATTTGGTACGGCGGTAATTGGGGAGCGGAAACGAGGTGAGTGACCACAGTG
AAAGCTGCGGTTGCCAATCC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MSQGKIVQIIGAVVDVEFQRNEVPKVYDALKVEGTAITLEVQQQLGDGVVRTIALGSTDGLKRNLVATNTERAISVPVGA
GTLGRIMDVLGRPIDEAGDVQASDHWEIHRSAPSYEDQASTTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMME
LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDASGKGK
DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQAVYVPADDLTDPSPATTFAHL
DSTVTLSRNIASLGIYPAVDPLDSTSRQMDPLVIGHEHYDTAQRVQQTLQKYKELKDIIAILGMDELSEEDKQSVSRARK
IERFFSQPFHVAEVFTGSPGKYVSLKDTIRGFKAICDGEYDHLPEQAFYMVGSIEEAVEKANKMSAKA

Sequences:

>Translated_468_residues
MSQGKIVQIIGAVVDVEFQRNEVPKVYDALKVEGTAITLEVQQQLGDGVVRTIALGSTDGLKRNLVATNTERAISVPVGA
GTLGRIMDVLGRPIDEAGDVQASDHWEIHRSAPSYEDQASTTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMME
LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDASGKGK
DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQAVYVPADDLTDPSPATTFAHL
DSTVTLSRNIASLGIYPAVDPLDSTSRQMDPLVIGHEHYDTAQRVQQTLQKYKELKDIIAILGMDELSEEDKQSVSRARK
IERFFSQPFHVAEVFTGSPGKYVSLKDTIRGFKAICDGEYDHLPEQAFYMVGSIEEAVEKANKMSAKA
>Mature_467_residues
SQGKIVQIIGAVVDVEFQRNEVPKVYDALKVEGTAITLEVQQQLGDGVVRTIALGSTDGLKRNLVATNTERAISVPVGAG
TLGRIMDVLGRPIDEAGDVQASDHWEIHRSAPSYEDQASTTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMEL
INNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDASGKGKD
VLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQAVYVPADDLTDPSPATTFAHLD
STVTLSRNIASLGIYPAVDPLDSTSRQMDPLVIGHEHYDTAQRVQQTLQKYKELKDIIAILGMDELSEEDKQSVSRARKI
ERFFSQPFHVAEVFTGSPGKYVSLKDTIRGFKAICDGEYDHLPEQAFYMVGSIEEAVEKANKMSAKA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=472, Percent_Identity=66.3135593220339, Blast_Score=634, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=327, Percent_Identity=27.217125382263, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI19913426, Length=402, Percent_Identity=24.1293532338308, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI19913428, Length=366, Percent_Identity=25.4098360655738, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI50345984, Length=309, Percent_Identity=23.9482200647249, Blast_Score=93, Evalue=6e-19,
Organism=Homo sapiens, GI4757810, Length=309, Percent_Identity=23.9482200647249, Blast_Score=93, Evalue=6e-19,
Organism=Escherichia coli, GI1790170, Length=466, Percent_Identity=79.8283261802575, Blast_Score=764, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=322, Percent_Identity=28.5714285714286, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1790172, Length=388, Percent_Identity=23.7113402061856, Blast_Score=107, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI25144756, Length=474, Percent_Identity=64.1350210970464, Blast_Score=615, Evalue=1e-176,
Organism=Caenorhabditis elegans, GI17565854, Length=330, Percent_Identity=27.8787878787879, Blast_Score=117, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17510931, Length=344, Percent_Identity=26.1627906976744, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17570191, Length=358, Percent_Identity=25.1396648044693, Blast_Score=111, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI71988080, Length=327, Percent_Identity=23.8532110091743, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71988063, Length=327, Percent_Identity=23.8532110091743, Blast_Score=99, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI71988074, Length=270, Percent_Identity=23.3333333333333, Blast_Score=77, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322581, Length=462, Percent_Identity=64.7186147186147, Blast_Score=620, Evalue=1e-178,
Organism=Saccharomyces cerevisiae, GI6319603, Length=390, Percent_Identity=27.1794871794872, Blast_Score=123, Evalue=6e-29,
Organism=Saccharomyces cerevisiae, GI6319370, Length=395, Percent_Identity=25.0632911392405, Blast_Score=105, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6320016, Length=238, Percent_Identity=25.6302521008403, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24638766, Length=474, Percent_Identity=65.1898734177215, Blast_Score=620, Evalue=1e-178,
Organism=Drosophila melanogaster, GI28574560, Length=473, Percent_Identity=61.0993657505285, Blast_Score=581, Evalue=1e-166,
Organism=Drosophila melanogaster, GI20129479, Length=326, Percent_Identity=26.9938650306748, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24583992, Length=329, Percent_Identity=26.7477203647416, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI281361666, Length=400, Percent_Identity=24.75, Blast_Score=111, Evalue=9e-25,
Organism=Drosophila melanogaster, GI24646341, Length=400, Percent_Identity=24.75, Blast_Score=111, Evalue=9e-25,
Organism=Drosophila melanogaster, GI17136796, Length=400, Percent_Identity=24.75, Blast_Score=111, Evalue=9e-25,
Organism=Drosophila melanogaster, GI24583988, Length=329, Percent_Identity=26.7477203647416, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583986, Length=329, Percent_Identity=26.7477203647416, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583984, Length=329, Percent_Identity=26.7477203647416, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24658560, Length=341, Percent_Identity=24.633431085044, Blast_Score=99, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=48.9130434782609, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50890; Mature: 50759

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQGKIVQIIGAVVDVEFQRNEVPKVYDALKVEGTAITLEVQQQLGDGVVRTIALGSTDG
CCCCHHHHEEHHHHEEEECCCCCCHHHHHHEECCEEEEEEEHHHHCCCCEEEEEECCCCC
LKRNLVATNTERAISVPVGAGTLGRIMDVLGRPIDEAGDVQASDHWEIHRSAPSYEDQAS
CCCCCEECCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCHHH
TTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCC
RTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDASGKGK
CCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCC
DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQA
EEEEEEECCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
VYVPADDLTDPSPATTFAHLDSTVTLSRNIASLGIYPAVDPLDSTSRQMDPLVIGHEHYD
EEECCCCCCCCCCCCHHHHCCCEEEECCCHHHHCCCCCCCCCCCCHHCCCCEEECCCCCC
TAQRVQQTLQKYKELKDIIAILGMDELSEEDKQSVSRARKIERFFSQPFHVAEVFTGSPG
HHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCCEEEHEEECCCC
KYVSLKDTIRGFKAICDGEYDHLPEQAFYMVGSIEEAVEKANKMSAKA
CEEEHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQGKIVQIIGAVVDVEFQRNEVPKVYDALKVEGTAITLEVQQQLGDGVVRTIALGSTDG
CCCHHHHEEHHHHEEEECCCCCCHHHHHHEECCEEEEEEEHHHHCCCCEEEEEECCCCC
LKRNLVATNTERAISVPVGAGTLGRIMDVLGRPIDEAGDVQASDHWEIHRSAPSYEDQAS
CCCCCEECCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCHHH
TTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCC
RTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDASGKGK
CCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCC
DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQA
EEEEEEECCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
VYVPADDLTDPSPATTFAHLDSTVTLSRNIASLGIYPAVDPLDSTSRQMDPLVIGHEHYD
EEECCCCCCCCCCCCHHHHCCCEEEECCCHHHHCCCCCCCCCCCCHHCCCCEEECCCCCC
TAQRVQQTLQKYKELKDIIAILGMDELSEEDKQSVSRARKIERFFSQPFHVAEVFTGSPG
HHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCCEEEHEEECCCC
KYVSLKDTIRGFKAICDGEYDHLPEQAFYMVGSIEEAVEKANKMSAKA
CEEEHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA