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The map label for this gene is pel2

Identifier: 78049243

GI number: 78049243

Start: 4261371

End: 4262450

Strand: Reverse

Name: pel2

Synonym: XCV3687

Alternate gene names: NA

Gene position: 4262450-4261371 (Counterclockwise)

Preceding gene: 78049244

Following gene: 78049241

Centisome position: 82.31

GC content: 59.35

Gene sequence:

>1080_bases
ATGAAGCCGAAATTTTCGACGGCGGCCGCCGCGTCGCTGTTCGTTGGGTCGTTGCTGCTCACCGGCGTTGCCTATGCCGA
TGCGGCGTTGGAGGTTGCAACCACGGGCTGGGCAACCCAGAACGGCGGCACCAAGGGCGGCTCCAAAGCGGCTGCCGCCA
ATATCTACACCGTCAAGAATGCCGCCGAGTTGAAAGCTGCATTGAGCGCAAGCGTCGGTAGCAACGGACGCATCATCAAG
GTCAGCGGCATCATCGATGTCAGCGAAGGCAAGCCGTACACCAAGACCTCGGACATGAAGTCACGTGCGCGCCTGGATAT
TCCGACCAAGACCACCTTGATAGGCATCACCAGCAACGCGGAAATCCGCGAAGGCTACATGTACGTCAAGGCCAACGACG
TCATCATCCGCAACCTCACCATCGAAAATCCATGGGACCCGGAACCGGTCTGGGACCCGGATGACGGCAGCGCCGGCAAC
TGGAATGCGGAGTACGACGGCCTGACCGTGGAAGGCGCCAGCAACGTGTGGGTGGACCATGTCACCTTCACCGATGGCCG
CAGGACTGACGATCAGAACGGCACCGCAAATGGCCGTCCGAAACAGCACCACGATGGCGCGATGGACATCAAGAAAGGCG
CCAATTTCGTCACCGTCTCGTATTCGGCCTTCAAGTCGCACGAGAAGAACAACCTGATCGGCTCCAGCGACAGCGCGTCC
AGTACCGACAGCGGCAAGCTCAAGGTCACCATTCATAACACCCTGTTCGAAAACATTTCCGCGCGCGCCCCGCGTGTGCG
CTTCGGTCAGGTGCATCTGTACAACAACTACCACGTCGGCAGCACCAGCAATAAGGTCTATCCGTTCTCTTACGCGCATG
GCGTGGGCAAGGAGTCGAAGATCTTCTCCGAGCGCAACGTGTTCGAGATCAGCGGTGTCAGCAGCTGCGACAAGATTGCC
GCCGACTATGGTGGCAGCGTGTATCGCGATCAGGGTTCCCTGCTCAATGGCAAGGCGCTGTCGTGCTCGTGGAATACCAA
CATCGGCTGGACCCCGCCCTATACCTACAACCCGCTCTAG

Upstream 100 bases:

>100_bases
GGAATGGAATATTCCACAGCTGAATAATACGTTCCGAGTCTGCTGGGCCAGGGGTGCGCCGCTGCGTGGCGCATCGAACC
CATCTGAGGGAGAGATCAAG

Downstream 100 bases:

>100_bases
GCCGACAAGGTCGCTGCAGACGTCAAGGCCAAGGCAGGCGCCGGCAAGCTCTAACCGCCACTGGTTGCAGGGTTGCAAAG
TCAGCGCCGTACGTCGTTGC

Product: Pectate lyase precursor

Products: NA

Alternate protein names: PL; PSTRU-3 [H]

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MKPKFSTAAAASLFVGSLLLTGVAYADAALEVATTGWATQNGGTKGGSKAAAANIYTVKNAAELKAALSASVGSNGRIIK
VSGIIDVSEGKPYTKTSDMKSRARLDIPTKTTLIGITSNAEIREGYMYVKANDVIIRNLTIENPWDPEPVWDPDDGSAGN
WNAEYDGLTVEGASNVWVDHVTFTDGRRTDDQNGTANGRPKQHHDGAMDIKKGANFVTVSYSAFKSHEKNNLIGSSDSAS
STDSGKLKVTIHNTLFENISARAPRVRFGQVHLYNNYHVGSTSNKVYPFSYAHGVGKESKIFSERNVFEISGVSSCDKIA
ADYGGSVYRDQGSLLNGKALSCSWNTNIGWTPPYTYNPL

Sequences:

>Translated_359_residues
MKPKFSTAAAASLFVGSLLLTGVAYADAALEVATTGWATQNGGTKGGSKAAAANIYTVKNAAELKAALSASVGSNGRIIK
VSGIIDVSEGKPYTKTSDMKSRARLDIPTKTTLIGITSNAEIREGYMYVKANDVIIRNLTIENPWDPEPVWDPDDGSAGN
WNAEYDGLTVEGASNVWVDHVTFTDGRRTDDQNGTANGRPKQHHDGAMDIKKGANFVTVSYSAFKSHEKNNLIGSSDSAS
STDSGKLKVTIHNTLFENISARAPRVRFGQVHLYNNYHVGSTSNKVYPFSYAHGVGKESKIFSERNVFEISGVSSCDKIA
ADYGGSVYRDQGSLLNGKALSCSWNTNIGWTPPYTYNPL
>Mature_359_residues
MKPKFSTAAAASLFVGSLLLTGVAYADAALEVATTGWATQNGGTKGGSKAAAANIYTVKNAAELKAALSASVGSNGRIIK
VSGIIDVSEGKPYTKTSDMKSRARLDIPTKTTLIGITSNAEIREGYMYVKANDVIIRNLTIENPWDPEPVWDPDDGSAGN
WNAEYDGLTVEGASNVWVDHVTFTDGRRTDDQNGTANGRPKQHHDGAMDIKKGANFVTVSYSAFKSHEKNNLIGSSDSAS
STDSGKLKVTIHNTLFENISARAPRVRFGQVHLYNNYHVGSTSNKVYPFSYAHGVGKESKIFSERNVFEISGVSSCDKIA
ADYGGSVYRDQGSLLNGKALSCSWNTNIGWTPPYTYNPL

Specific function: Plays a role in bacterial invasion of plants [H]

COG id: COG3866

COG function: function code G; Pectate lyase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide lyase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002022
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF00544 Pec_lyase_C [H]

EC number: =4.2.2.2 [H]

Molecular weight: Translated: 38525; Mature: 38525

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPKFSTAAAASLFVGSLLLTGVAYADAALEVATTGWATQNGGTKGGSKAAAANIYTVKN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEECCCCCCCCCCCEEEEEEEECC
AAELKAALSASVGSNGRIIKVSGIIDVSEGKPYTKTSDMKSRARLDIPTKTTLIGITSNA
HHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCC
EIREGYMYVKANDVIIRNLTIENPWDPEPVWDPDDGSAGNWNAEYDGLTVEGASNVWVDH
EEECCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEE
VTFTDGRRTDDQNGTANGRPKQHHDGAMDIKKGANFVTVSYSAFKSHEKNNLIGSSDSAS
EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEEHHHHCCCCCCCCCCCCCCC
STDSGKLKVTIHNTLFENISARAPRVRFGQVHLYNNYHVGSTSNKVYPFSYAHGVGKESK
CCCCCEEEEEECHHHHHHHHCCCCCEEEEEEEEEECEEECCCCCEEEEEHHHCCCCCCHH
IFSERNVFEISGVSSCDKIAADYGGSVYRDQGSLLNGKALSCSWNTNIGWTPPYTYNPL
HHCCCCEEEECCCCCHHHHHHHCCCEEEECCCCEECCCEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MKPKFSTAAAASLFVGSLLLTGVAYADAALEVATTGWATQNGGTKGGSKAAAANIYTVKN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEECCCCCCCCCCCEEEEEEEECC
AAELKAALSASVGSNGRIIKVSGIIDVSEGKPYTKTSDMKSRARLDIPTKTTLIGITSNA
HHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCC
EIREGYMYVKANDVIIRNLTIENPWDPEPVWDPDDGSAGNWNAEYDGLTVEGASNVWVDH
EEECCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEE
VTFTDGRRTDDQNGTANGRPKQHHDGAMDIKKGANFVTVSYSAFKSHEKNNLIGSSDSAS
EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEEHHHHCCCCCCCCCCCCCCC
STDSGKLKVTIHNTLFENISARAPRVRFGQVHLYNNYHVGSTSNKVYPFSYAHGVGKESK
CCCCCEEEEEECHHHHHHHHCCCCCEEEEEEEEEECEEECCCCCEEEEEHHHCCCCCCHH
IFSERNVFEISGVSSCDKIAADYGGSVYRDQGSLLNGKALSCSWNTNIGWTPPYTYNPL
HHCCCCEEEECCCCCHHHHHHHCCCEEEECCCCEECCCEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8589419 [H]