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The map label for this gene is lptF [H]

Identifier: 78049236

GI number: 78049236

Start: 4248999

End: 4250081

Strand: Reverse

Name: lptF [H]

Synonym: XCV3680

Alternate gene names: 78049236

Gene position: 4250081-4248999 (Counterclockwise)

Preceding gene: 78049241

Following gene: 78049235

Centisome position: 82.07

GC content: 67.04

Gene sequence:

>1083_bases
ATGCCGAAGCTCGATCGATACCTGCTTAGCGATTTCACCCAGAGCTTCCTGGCCACCTTGATCGTGCTGCTGGTCGTCAG
CGTCGGCGGCGTGCTGGTGGATATCCTCGGCAATATCGCCGACGGCCGCATCCCGGCGCGCTTGCTGCTGTCGCAGGTAG
GGCTGCAATTCGTGGCGTATCTGCCCATCATCCTGCCGCTGGCCTTGATGCTGGGCCTGCTGCTGGCACTGGCGCGGCTG
TACCGCGATTCAGAAATGGCCGTCATTACCGCCATTGGCGTGGGCCCCAGGCGCATGCTGCGGCCGATGCTGATGCTGGT
GGTGCCGGTGGTGGTGGTCATCGGGTTGTGCTCGCTGTGGCTGGGCCCCTGGGCGAGCCGTACCGCCGAGGCGATGCTGG
AAGATGCCAACCGCAGCGTGCTGATGGCCGGCCTGGAGTCGGGCCAGTTCACGCCGTTGTCCGGCGGCGGGGTGGTCTAC
CTGCAAACGATCTCTGCCGACGGCAAGGGCCTGGGCAAGGTCTTCATGCAGCGCCAGCAGAACGACCGCATCGATGTGGT
CACCGCCGACCGCGGCGCGATGTTCTTCGAAGGCAAGACCGACCGTTACCTGCGCCTGGACGATGGCTACCGCACCGAGG
GCCCGGCGAGCGGCGCGACCCTGGACTACCGCTTGATGAAGTTCGCCAGCAGCGATATCGCCCTGCCAGACCGCACCCGC
GTGCACGATGCCAACGACCCCGAAGTGATGTGGACCACCCAGCTGCTGTCCGACGAGCGCCCTGCCGCGCGCGCCCAGCT
GCATGAGCGCCTGGCGCCGCCGTTGCTGGCGCTGGCGTTTGCCTTGCTCACCTTGCCGTTGTCGCGCAGTGCGCCGCGGC
AACAGCGTTATGGCCGGATCATGCTGGCGTTTCTGGCCTACATGGTGGGCACCAATCTGATGATCGTCGGCACCCAGTGG
ATCGCCAATGGCAAGACTCCGGCGGCGCTGGGCCTGTGGTGGTTGACGCTGCCGCTGCTGGCCGTGGCGGTGTGGGCGTA
TGCGCGCGATGGCCGCGTGCGTCGGCCGGGGGCGCGCGCATGA

Upstream 100 bases:

>100_bases
ATTCCGTAGGCAAATCCGTACAATCGCGGGCTGTTTACGCCAACCGGACTAGGCTGGCGGCGCCGCGAACGAATCCGAGA
GTTTAAAACAAGCCCACCCC

Downstream 100 bases:

>100_bases
AGCTGACGCCGCGGGTCCACGATTGGTATGTCGGTCGCGTGGTGCTGTTCACCGTGCTGCTGACCTGGGCGGTGCTGCTG
GGGCTGGATCTGGTCAACGC

Product: YjgP/YjgQ family permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAYLPIILPLALMLGLLLALARL
YRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCSLWLGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVY
LQTISADGKGLGKVFMQRQQNDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDRTR
VHDANDPEVMWTTQLLSDERPAARAQLHERLAPPLLALAFALLTLPLSRSAPRQQRYGRIMLAFLAYMVGTNLMIVGTQW
IANGKTPAALGLWWLTLPLLAVAVWAYARDGRVRRPGARA

Sequences:

>Translated_360_residues
MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAYLPIILPLALMLGLLLALARL
YRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCSLWLGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVY
LQTISADGKGLGKVFMQRQQNDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDRTR
VHDANDPEVMWTTQLLSDERPAARAQLHERLAPPLLALAFALLTLPLSRSAPRQQRYGRIMLAFLAYMVGTNLMIVGTQW
IANGKTPAALGLWWLTLPLLAVAVWAYARDGRVRRPGARA
>Mature_359_residues
PKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAYLPIILPLALMLGLLLALARLY
RDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCSLWLGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVYL
QTISADGKGLGKVFMQRQQNDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDRTRV
HDANDPEVMWTTQLLSDERPAARAQLHERLAPPLLALAFALLTLPLSRSAPRQQRYGRIMLAFLAYMVGTNLMIVGTQWI
ANGKTPAALGLWWLTLPLLAVAVWAYARDGRVRRPGARA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=346, Percent_Identity=32.3699421965318, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 39426; Mature: 39295

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCSLW
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
LGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVYLQTISADGKGLGKVFMQRQQ
HCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCC
NDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDRTR
CCCEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
VHDANDPEVMWTTQLLSDERPAARAQLHERLAPPLLALAFALLTLPLSRSAPRQQRYGRI
CCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
MLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWAYARDGRVRRPGARA
HHHHHHHHHCCCEEEEECCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCSLW
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
LGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVYLQTISADGKGLGKVFMQRQQ
HCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCC
NDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDRTR
CCCEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
VHDANDPEVMWTTQLLSDERPAARAQLHERLAPPLLALAFALLTLPLSRSAPRQQRYGRI
CCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
MLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWAYARDGRVRRPGARA
HHHHHHHHHCCCEEEEECCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]