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The map label for this gene is xpsF [H]

Identifier: 78049223

GI number: 78049223

Start: 4221246

End: 4222463

Strand: Reverse

Name: xpsF [H]

Synonym: XCV3667

Alternate gene names: 78049223

Gene position: 4222463-4221246 (Counterclockwise)

Preceding gene: 78049224

Following gene: 78049222

Centisome position: 81.54

GC content: 64.45

Gene sequence:

>1218_bases
ATGCCCCTCTACCGTTACAAGGCCCTGGACGCCCACGGCGAAATGCTCGACGGCCAGATGGAAGCGGCCAGCGATGCCGA
GGTGGCGTTGCGTCTGCAGGAACAGGGCCATCTGCCGGTGGAAACGCGCCTGGCCACCGGCGAAAACGATTCGCCGTCGC
TGCGCATGCTGCTGCGCAAGAAGCCGTTCGACAATGCGGCGCTGGTGCAATTCACCCAGCAACTGGCCACGTTGATCGGC
GCGGGGCAACCGCTGGACCGTGCGCTGTCGATTCTGATGGATCTGCCCGAAGACGAAAAAAGCCGGCGGGTGATCGGCGA
TGTGCGCGATACCGTGCGCGGCGGTGCGCCGTTGTCGTCCGCACTCGAGCGCCAGCACGGGCTGTTTTCCAAGCTGTACA
TCAACATGGTGCGCGCCGGCGAAGCTGGCGGCAGCATGCAGGACACGCTGCAGCGGCTGGCCGATTATCTGGAGCGCAGC
CGTGCGCTCAGGGGCAAGGTGATCAACGCGCTGATCTACCCGGCCATCCTGCTGGCGGTGGTGGGCTGTGCGTTGCTGTT
CCTGCTCGGTTACGTGGTGCCGCAATTTGCGCAGATGTACGAAAGCCTGGATGTGACACTGCCATGGTTTACCCAGGCGG
TGTTGAGCGTGGGCCTGCTGGTGCGCGACTGGTGGATCGTGCTGATCGTCGTGCCGGGCGTGCTGGGGCTGTGGCTGGAT
CGCAAGCGTCGCAATGCCGCGTTCCGTGCATCGCTGGACCAATGGCTGCTGCGCCAGAAGGTGGTCGGCAGCCTGATTGC
CCGGCTGGAAACCGCACGCCTGACGCGCACCCTGGGCACCTTGCTGCGCAATGGCGTGCCATTGCTGGCGGCGATCGGCA
TCGCGCGCAACGTCATGTCCAATCTGGCGTTGGTGGAGGATGTTGCCAATGCGGCCGACGACGTCAAGAATGGCCATGGC
CTGTCGATGTCGCTGGCACGCGGCAAGCGCTTTCCGCGGCTGGCGCTGCAGATGATCCAGGTGGGCGAAGAGTCCGGCGC
ACTGGACACGATGCTGCTCAAGACCGCCGACACCTTCGAACTGGAAACCGCGCAGGCCATCGACCGCGCACTGGCCGCGC
TGGTGCCGTTCATCACGCTGGTACTGGCCTCGGTGGTGGGTCTTGTCATCATTTCGGTCCTGGTCCCGCTGTATGACCTC
ACCAATGCAATCGGCTGA

Upstream 100 bases:

>100_bases
TGTGCGTGCACAGCGATGCGTGCGCGATGTCGCCAATACGCAGCGACGTGCTTTTCCCGATTCCCCAATCCCAATTCCAC
AATCCCGGCCTCCCAGCCTG

Downstream 100 bases:

>100_bases
GAGCGGAGCTCTGCGCAACGGTGCAGTCTTCACCCAGCACAGCCGCTGCTCGGAATCGGCATGGCGCGCTCGTACACTGC
ACATCCCGCGCGTGTGCCGC

Product: type II secretory pathway component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MPLYRYKALDAHGEMLDGQMEAASDAEVALRLQEQGHLPVETRLATGENDSPSLRMLLRKKPFDNAALVQFTQQLATLIG
AGQPLDRALSILMDLPEDEKSRRVIGDVRDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERS
RALRGKVINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVTLPWFTQAVLSVGLLVRDWWIVLIVVPGVLGLWLD
RKRRNAAFRASLDQWLLRQKVVGSLIARLETARLTRTLGTLLRNGVPLLAAIGIARNVMSNLALVEDVANAADDVKNGHG
LSMSLARGKRFPRLALQMIQVGEESGALDTMLLKTADTFELETAQAIDRALAALVPFITLVLASVVGLVIISVLVPLYDL
TNAIG

Sequences:

>Translated_405_residues
MPLYRYKALDAHGEMLDGQMEAASDAEVALRLQEQGHLPVETRLATGENDSPSLRMLLRKKPFDNAALVQFTQQLATLIG
AGQPLDRALSILMDLPEDEKSRRVIGDVRDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERS
RALRGKVINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVTLPWFTQAVLSVGLLVRDWWIVLIVVPGVLGLWLD
RKRRNAAFRASLDQWLLRQKVVGSLIARLETARLTRTLGTLLRNGVPLLAAIGIARNVMSNLALVEDVANAADDVKNGHG
LSMSLARGKRFPRLALQMIQVGEESGALDTMLLKTADTFELETAQAIDRALAALVPFITLVLASVVGLVIISVLVPLYDL
TNAIG
>Mature_404_residues
PLYRYKALDAHGEMLDGQMEAASDAEVALRLQEQGHLPVETRLATGENDSPSLRMLLRKKPFDNAALVQFTQQLATLIGA
GQPLDRALSILMDLPEDEKSRRVIGDVRDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSR
ALRGKVINALIYPAILLAVVGCALLFLLGYVVPQFAQMYESLDVTLPWFTQAVLSVGLLVRDWWIVLIVVPGVLGLWLDR
KRRNAAFRASLDQWLLRQKVVGSLIARLETARLTRTLGTLLRNGVPLLAAIGIARNVMSNLALVEDVANAADDVKNGHGL
SMSLARGKRFPRLALQMIQVGEESGALDTMLLKTADTFELETAQAIDRALAALVPFITLVLASVVGLVIISVLVPLYDLT
NAIG

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=404, Percent_Identity=33.1683168316832, Blast_Score=205, Evalue=4e-54,
Organism=Escherichia coli, GI1786295, Length=402, Percent_Identity=24.6268656716418, Blast_Score=130, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44235; Mature: 44104

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLYRYKALDAHGEMLDGQMEAASDAEVALRLQEQGHLPVETRLATGENDSPSLRMLLRK
CCCCHHHHHCCCHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHEECCCCCCCHHHHHHHHH
KPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDTVRGGAPLSS
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHH
ALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINALIYPAILLAV
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGCALLFLLGYVVPQFAQMYESLDVTLPWFTQAVLSVGLLVRDWWIVLIVVPGVLGLWLD
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKRRNAAFRASLDQWLLRQKVVGSLIARLETARLTRTLGTLLRNGVPLLAAIGIARNVMS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
NLALVEDVANAADDVKNGHGLSMSLARGKRFPRLALQMIQVGEESGALDTMLLKTADTFE
HHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCHH
LETAQAIDRALAALVPFITLVLASVVGLVIISVLVPLYDLTNAIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PLYRYKALDAHGEMLDGQMEAASDAEVALRLQEQGHLPVETRLATGENDSPSLRMLLRK
CCCHHHHHCCCHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHEECCCCCCCHHHHHHHHH
KPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDTVRGGAPLSS
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHH
ALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINALIYPAILLAV
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGCALLFLLGYVVPQFAQMYESLDVTLPWFTQAVLSVGLLVRDWWIVLIVVPGVLGLWLD
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKRRNAAFRASLDQWLLRQKVVGSLIARLETARLTRTLGTLLRNGVPLLAAIGIARNVMS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
NLALVEDVANAADDVKNGHGLSMSLARGKRFPRLALQMIQVGEESGALDTMLLKTADTFE
HHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCHH
LETAQAIDRALAALVPFITLVLASVVGLVIISVLVPLYDLTNAIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1944223; 12024217 [H]