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The map label for this gene is xpsD [H]

Identifier: 78049214

GI number: 78049214

Start: 4213303

End: 4215582

Strand: Reverse

Name: xpsD [H]

Synonym: XCV3658

Alternate gene names: 78049214

Gene position: 4215582-4213303 (Counterclockwise)

Preceding gene: 78049215

Following gene: 78049213

Centisome position: 81.41

GC content: 57.98

Gene sequence:

>2280_bases
ATGACGCCGCGCCTGTTTCCCGTGTCCCTGCTGATTGGCCTGCTGGCCGGTTGCGCCACCACTCCGCCGCCGGACGTGCG
CCGCAACGCGCGCCTGGATCCGCAAGTCGGTGCTGCCGGCGCCACCCAGACCGCCGCCGAGCAGGCTGCCGATGGCAACG
CCAACGCCAGTGCCAAGCCCAGTCCGGTGATCCGGCGCGGCAGCGGCACCATGATCAACCAGGGCGCCGCGTCCGCGCCG
GCGCCCACGCTGGGCATGGCCAGCAGCGGCAGTGCCACCTTCAATTTCGAAGGCGAATCGGTGCAGGCGGTGGTCAAGGC
GATCCTGGGCGACATGCTCGGCCAGAACTACGTCATCGCGCCCGGCGTGCAGGGCACCGTGACCTTGGCCACGCCCAATC
CGGTGTCGCCCGCGCAGGCGCTGAACCTGCTGGAGATGGTGCTGGGCTGGAACAACGCCCGCATGGTATTCAGCGGTGGC
CGCTACAACATCGTGCCGGCCGACCAGGCGTTGGCCGGCACCGTGGCGCCCAGCACCGCATCGCCCTCTGCCGCACGCGG
TTTCGAGGTGCGCGTGGTGCCGCTGAAGTTCATTTCCGCCAGCGAAATGAAAAAGGTGCTGGAGCCGTACGCGCGCCCGA
ACGCCATCGTCGGCACCGACCCGGCGCGCAATGTGATCACCCTGGGCGGCACTCGCGCGGAGCTGGAAAACTACCTGCGC
ACCGTGCAGATCTTCGACGTGGACTGGTTGTCGGGCATGTCGGTGGGCGTGTTTCCGATCCAGTCCGGCAAGGCCGAGAA
AGTCGCCGCCGATCTGGAAAAGGTGTTCGGGGAACAGAGCAAGACGCCCAGCGCCGGCATGTTCCGTTTCATGCCGTTGG
AAAACGCCAACGCGGTGCTGGTGATCACTCCGCAGCCGCGTTACCTGGACCAGATCCAGCAGTGGCTGGACCGCATCGAC
AGCGCCGGTGGCGGGGTGCGGTTGTTTTCCTACGAGCTGAAGTACATCAAGGCCAAGGACCTGGCCGATCGTCTCTCCGA
AGTGTTCGGTGGCCGTGGCAATGGCGGTAGTAGCAGTCCTACCTTGGTGCCTGGCGGTGTCGTAAATATGTTGGGCAATA
ACAGCGGTGGAGCCGATCGGGATGAAAGTCTTGGAAGTAGCAGTGGCGCCACAGGTGGAGATATAGGTGGCACGAGTAAT
GGTTCGAGTCAGTCGGGTACCTCTGGGAGCTTCGGCGGAAGCAGTGGCAGTGGCGGCGGCATGCTTCAGCTACAGCCTAG
TACCAACCAGAACGGTAGTGTGACGCTGGAGGTCGAAGGCGACAAAGTTGGTGTTTCTGCAGTCGCTGAAACCAATACGC
TACTTGTACGTTCAAGTGCGCAAGCATGGAGCTCCATTCGCGATGTGATTGAACGGCTCGATGTGATGCCAATGCAGGTC
CATATTGAGGCACAGATCGCTGAAGTGACATTGACTGGTCAGCTGGAATACGGTGTTAACTGGTATTTCGAGAATGCAGT
CAATGCACCTGTAAACGCAGATGGTACGGGCGGTGCTGGTCTCCCATCAGCTGCTGGTAGAGGTATTTGGGGGGATGTAT
CCGGTAGCGTTACAAATAATGGTCTTGCCTGGACTTTTCTGGGGAAAAACGCTGCCGCGATAATTAGTGCATTGGACCGT
GTCACAAATTTACGCCTCCTCCAGACTCCGTCAGTTTTTGTGCGGAACAATGCAGAGGCTACACTCAATGTAGGTTCTCG
AATTCCTATTAATTCGACATCGATAAATACGGGATTGGGTAGCGATAGTAGTTTTTCTTCAGTTCAATATATCGATACCG
GCGTTATTTTAAAGGTTCGCCCGCGCGTCACTAAGGATGGAATGGTTTTTCTTGATATTGTCCAAGAGGTTAGTACTCCT
GGAGCGCGCCCCGCAGCTTGCACTTCAGCGTCAACAACTACTGTCAATAGCGCTGCATGTAATGTTGACATAAATACTCG
CCGGGTAAAAACCGAAGCCGCTGTCCAGAACGGAGACACAATTATGCTTGCAGGTTTAATTGACGATTCGACCTCCGACG
GCAGTGCTGGGCTTCCTATCTTGAGCAAGCTGCCGGTCGTTGGCGCTCTTTTTGGACGTAAGACACAAAACAAGGATCGC
AGGGAGGTTATTGTGCTGATCACTCCGTCAATAGTACGGAATCCTCAAGAGGCGCGTAACTTGACCGATGAGTACGGGCA
AAAGTTTAAAGCAATGCAGCCACTTGAGAAGGGTAGATAG

Upstream 100 bases:

>100_bases
AGATGCGTGCCATCCGCGAACGCATCGAAGCCCGACGCCGCCAGCTGCAACAGCAGCGCCAGAGCGGCTCTACCCCCGGT
CAGACCCAATGAGTGAACGC

Downstream 100 bases:

>100_bases
AATTAAGGTTGAGATTGAGATTGAGATTGATGCAGGGGTTGTTTTTAAATGGATGTAATGGAGGGCTTGCGATGTTTCTT
GGCAAAAGATTCGGACTTGG

Product: type II secretory pathway component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 759; Mature: 758

Protein sequence:

>759_residues
MTPRLFPVSLLIGLLAGCATTPPPDVRRNARLDPQVGAAGATQTAAEQAADGNANASAKPSPVIRRGSGTMINQGAASAP
APTLGMASSGSATFNFEGESVQAVVKAILGDMLGQNYVIAPGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFSGG
RYNIVPADQALAGTVAPSTASPSAARGFEVRVVPLKFISASEMKKVLEPYARPNAIVGTDPARNVITLGGTRAELENYLR
TVQIFDVDWLSGMSVGVFPIQSGKAEKVAADLEKVFGEQSKTPSAGMFRFMPLENANAVLVITPQPRYLDQIQQWLDRID
SAGGGVRLFSYELKYIKAKDLADRLSEVFGGRGNGGSSSPTLVPGGVVNMLGNNSGGADRDESLGSSSGATGGDIGGTSN
GSSQSGTSGSFGGSSGSGGGMLQLQPSTNQNGSVTLEVEGDKVGVSAVAETNTLLVRSSAQAWSSIRDVIERLDVMPMQV
HIEAQIAEVTLTGQLEYGVNWYFENAVNAPVNADGTGGAGLPSAAGRGIWGDVSGSVTNNGLAWTFLGKNAAAIISALDR
VTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTP
GARPAACTSASTTTVNSAACNVDINTRRVKTEAAVQNGDTIMLAGLIDDSTSDGSAGLPILSKLPVVGALFGRKTQNKDR
REVIVLITPSIVRNPQEARNLTDEYGQKFKAMQPLEKGR

Sequences:

>Translated_759_residues
MTPRLFPVSLLIGLLAGCATTPPPDVRRNARLDPQVGAAGATQTAAEQAADGNANASAKPSPVIRRGSGTMINQGAASAP
APTLGMASSGSATFNFEGESVQAVVKAILGDMLGQNYVIAPGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFSGG
RYNIVPADQALAGTVAPSTASPSAARGFEVRVVPLKFISASEMKKVLEPYARPNAIVGTDPARNVITLGGTRAELENYLR
TVQIFDVDWLSGMSVGVFPIQSGKAEKVAADLEKVFGEQSKTPSAGMFRFMPLENANAVLVITPQPRYLDQIQQWLDRID
SAGGGVRLFSYELKYIKAKDLADRLSEVFGGRGNGGSSSPTLVPGGVVNMLGNNSGGADRDESLGSSSGATGGDIGGTSN
GSSQSGTSGSFGGSSGSGGGMLQLQPSTNQNGSVTLEVEGDKVGVSAVAETNTLLVRSSAQAWSSIRDVIERLDVMPMQV
HIEAQIAEVTLTGQLEYGVNWYFENAVNAPVNADGTGGAGLPSAAGRGIWGDVSGSVTNNGLAWTFLGKNAAAIISALDR
VTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTP
GARPAACTSASTTTVNSAACNVDINTRRVKTEAAVQNGDTIMLAGLIDDSTSDGSAGLPILSKLPVVGALFGRKTQNKDR
REVIVLITPSIVRNPQEARNLTDEYGQKFKAMQPLEKGR
>Mature_758_residues
TPRLFPVSLLIGLLAGCATTPPPDVRRNARLDPQVGAAGATQTAAEQAADGNANASAKPSPVIRRGSGTMINQGAASAPA
PTLGMASSGSATFNFEGESVQAVVKAILGDMLGQNYVIAPGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFSGGR
YNIVPADQALAGTVAPSTASPSAARGFEVRVVPLKFISASEMKKVLEPYARPNAIVGTDPARNVITLGGTRAELENYLRT
VQIFDVDWLSGMSVGVFPIQSGKAEKVAADLEKVFGEQSKTPSAGMFRFMPLENANAVLVITPQPRYLDQIQQWLDRIDS
AGGGVRLFSYELKYIKAKDLADRLSEVFGGRGNGGSSSPTLVPGGVVNMLGNNSGGADRDESLGSSSGATGGDIGGTSNG
SSQSGTSGSFGGSSGSGGGMLQLQPSTNQNGSVTLEVEGDKVGVSAVAETNTLLVRSSAQAWSSIRDVIERLDVMPMQVH
IEAQIAEVTLTGQLEYGVNWYFENAVNAPVNADGTGGAGLPSAAGRGIWGDVSGSVTNNGLAWTFLGKNAAAIISALDRV
TNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPG
ARPAACTSASTTTVNSAACNVDINTRRVKTEAAVQNGDTIMLAGLIDDSTSDGSAGLPILSKLPVVGALFGRKTQNKDRR
EVIVLITPSIVRNPQEARNLTDEYGQKFKAMQPLEKGR

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=487, Percent_Identity=26.0780287474333, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1789793, Length=284, Percent_Identity=25, Blast_Score=85, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 78871; Mature: 78740

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPRLFPVSLLIGLLAGCATTPPPDVRRNARLDPQVGAAGATQTAAEQAADGNANASAKP
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
SPVIRRGSGTMINQGAASAPAPTLGMASSGSATFNFEGESVQAVVKAILGDMLGQNYVIA
CCEEECCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEE
PGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFSGGRYNIVPADQALAGTVAPSTA
CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCHHHHCCCCCCCC
SPSAARGFEVRVVPLKFISASEMKKVLEPYARPNAIVGTDPARNVITLGGTRAELENYLR
CCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCHHHHHHHHH
TVQIFDVDWLSGMSVGVFPIQSGKAEKVAADLEKVFGEQSKTPSAGMFRFMPLENANAVL
EEEEEEEHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEE
VITPQPRYLDQIQQWLDRIDSAGGGVRLFSYELKYIKAKDLADRLSEVFGGRGNGGSSSP
EECCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHHCCCCCCCCCCC
TLVPGGVVNMLGNNSGGADRDESLGSSSGATGGDIGGTSNGSSQSGTSGSFGGSSGSGGG
EECCCHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MLQLQPSTNQNGSVTLEVEGDKVGVSAVAETNTLLVRSSAQAWSSIRDVIERLDVMPMQV
EEEECCCCCCCCEEEEEECCCEECEEEEECCCEEEEECCHHHHHHHHHHHHHHCCCEEEE
HIEAQIAEVTLTGQLEYGVNWYFENAVNAPVNADGTGGAGLPSAAGRGIWGDVSGSVTNN
EEEEEEEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
GLAWTFLGKNAAAIISALDRVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLG
CEEEEEECCCHHHHHHHHHHHHCEEEEECCCEEEECCCCEEEECCCCCCCCCCCCCCCCC
SDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTSASTTTVNSAAC
CCCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEECCEEE
NVDINTRRVKTEAAVQNGDTIMLAGLIDDSTSDGSAGLPILSKLPVVGALFGRKTQNKDR
EEECCCEEEEHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHCCHHHHHHCCCCCCCCC
REVIVLITPSIVRNPQEARNLTDEYGQKFKAMQPLEKGR
CEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHCHHHHCC
>Mature Secondary Structure 
TPRLFPVSLLIGLLAGCATTPPPDVRRNARLDPQVGAAGATQTAAEQAADGNANASAKP
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
SPVIRRGSGTMINQGAASAPAPTLGMASSGSATFNFEGESVQAVVKAILGDMLGQNYVIA
CCEEECCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEE
PGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFSGGRYNIVPADQALAGTVAPSTA
CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCHHHHCCCCCCCC
SPSAARGFEVRVVPLKFISASEMKKVLEPYARPNAIVGTDPARNVITLGGTRAELENYLR
CCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCHHHHHHHHH
TVQIFDVDWLSGMSVGVFPIQSGKAEKVAADLEKVFGEQSKTPSAGMFRFMPLENANAVL
EEEEEEEHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEE
VITPQPRYLDQIQQWLDRIDSAGGGVRLFSYELKYIKAKDLADRLSEVFGGRGNGGSSSP
EECCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHHCCCCCCCCCCC
TLVPGGVVNMLGNNSGGADRDESLGSSSGATGGDIGGTSNGSSQSGTSGSFGGSSGSGGG
EECCCHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MLQLQPSTNQNGSVTLEVEGDKVGVSAVAETNTLLVRSSAQAWSSIRDVIERLDVMPMQV
EEEECCCCCCCCEEEEEECCCEECEEEEECCCEEEEECCHHHHHHHHHHHHHHCCCEEEE
HIEAQIAEVTLTGQLEYGVNWYFENAVNAPVNADGTGGAGLPSAAGRGIWGDVSGSVTNN
EEEEEEEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
GLAWTFLGKNAAAIISALDRVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLG
CEEEEEECCCHHHHHHHHHHHHCEEEEECCCEEEECCCCEEEECCCCCCCCCCCCCCCCC
SDSSFSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTSASTTTVNSAAC
CCCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEECCEEE
NVDINTRRVKTEAAVQNGDTIMLAGLIDDSTSDGSAGLPILSKLPVVGALFGRKTQNKDR
EEECCCEEEEHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHCCHHHHHHCCCCCCCCC
REVIVLITPSIVRNPQEARNLTDEYGQKFKAMQPLEKGR
CEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]