| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
Click here to switch to the map view.
The map label for this gene is 78049165
Identifier: 78049165
GI number: 78049165
Start: 4149802
End: 4150854
Strand: Reverse
Name: 78049165
Synonym: XCV3609
Alternate gene names: NA
Gene position: 4150854-4149802 (Counterclockwise)
Preceding gene: 78049166
Following gene: 78049164
Centisome position: 80.16
GC content: 69.52
Gene sequence:
>1053_bases GTGATGCGGGCGATGTGGATGCTGCTGTTGCTGCTGGTCCATGGCCTCGCCTGCGCGGCGCCCGGCGATGTGCGGCGCTT TCCTGCACAGGGCCCGGTGCGTGTGCAGCTGCGCGTGCAGGGCTCCACCGACCTGGAAGTGTTCGGCGCAGTCATCCGGG ATTACCAGCGGCTGCATCCGGGCACCGAGGTGATCTACGAAGACGTGATTGCCTGGGACATCTATGACCGTTATCTGCAC CCAGGCCATGGCGCACCTGCTGCAGACATGCTGATCAGCGCCAGCATGGATCTGCAGACCAAACTGGTGAACGACGGCCA CGCGTTGGCGCATCGCTCCGCACAGACCGAAGCCTTGCCGGCGTGGGCGCAATGGCGCCATGAAGTGTTCGGCATCAGCT ACGAGCCGGTGGCCATCGTCTACAACACGCGCAAGCTGGATGCCGCCCGCGTGCCGCGCACGCGCCGGCAGTTGCTGGCG TTGTTGCGCGCGCCCGATGCACCGCTGCGCGGCAAGGTCGGCACCTACGATGTCGAACGCAGCGGCGTGGGGTATCTGTT CGCGACCCAGGACGGCCAGGTGGGCAGTATCGCCGGCGCGCTGCTCGCGGCGCTGGGGGCCAACCGGGTGGTATTGGAGG AGCGCACCGGCAGCCTGCTCGACCGGGTCAGCCGTGGCGAGCTCCTGCTGGCCTACAACGTGCTTGGCTCCTACGCGCAG GCCCGCATCGATGCGGGCGCGCCGCTGGGCATCGTGCAGCCGCAGGACTACACGCTGGTGGCGCTGCGCACGGCGGTGAT CCCCAAGACGGCGCCGCATGCGCCGGAGGCGCGCCGGTTTCTGGACTACCTGCTTTCGCCGCGCGGCCAGCAGGTGCTGT CGCGCGAGGCGCGGCTGATGCCGATCCTGCCGGCCGCCGGTGGCCGCGGCGGTTCGGCGCAGCCACCGTTCCGCCCGATC CCGCTCGGCCCCGGTCTGCTGGTGTATCTGGACAAGCTCAAGCGCCGCCAGTTCCTGGACGCCTGGCGGGCGAGCACGCA GCCGCCGCGTTAG
Upstream 100 bases:
>100_bases TCGTCAAGCGCGTGGTGGAAGCGCATGGCGGGCGCATCGATCTGTCCAACCGCATCGGTGGCGGCTTGATCGCCTCGCTG CATTTTCCCGGAGGAGACGC
Downstream 100 bases:
>100_bases AGCGTGTGATGCACGTTGAGATGAGATGCGTTGGCCGTCAGCGGTGTGGAGCGGCCACCGCTTGGCTTGTCTTGGCGCCA GCCAAGCCGGCGCCACGCAG
Product: putative periplasmic iron-binding protein
Products: NA
Alternate protein names: ABC-Type Fe3+ Transporter Periplasmic Protein; Iron ABC Transporter; HAMP Domain-Containing; Two-Component Sensor Histidine Kinase
Number of amino acids: Translated: 350; Mature: 350
Protein sequence:
>350_residues MMRAMWMLLLLLVHGLACAAPGDVRRFPAQGPVRVQLRVQGSTDLEVFGAVIRDYQRLHPGTEVIYEDVIAWDIYDRYLH PGHGAPAADMLISASMDLQTKLVNDGHALAHRSAQTEALPAWAQWRHEVFGISYEPVAIVYNTRKLDAARVPRTRRQLLA LLRAPDAPLRGKVGTYDVERSGVGYLFATQDGQVGSIAGALLAALGANRVVLEERTGSLLDRVSRGELLLAYNVLGSYAQ ARIDAGAPLGIVQPQDYTLVALRTAVIPKTAPHAPEARRFLDYLLSPRGQQVLSREARLMPILPAAGGRGGSAQPPFRPI PLGPGLLVYLDKLKRRQFLDAWRASTQPPR
Sequences:
>Translated_350_residues MMRAMWMLLLLLVHGLACAAPGDVRRFPAQGPVRVQLRVQGSTDLEVFGAVIRDYQRLHPGTEVIYEDVIAWDIYDRYLH PGHGAPAADMLISASMDLQTKLVNDGHALAHRSAQTEALPAWAQWRHEVFGISYEPVAIVYNTRKLDAARVPRTRRQLLA LLRAPDAPLRGKVGTYDVERSGVGYLFATQDGQVGSIAGALLAALGANRVVLEERTGSLLDRVSRGELLLAYNVLGSYAQ ARIDAGAPLGIVQPQDYTLVALRTAVIPKTAPHAPEARRFLDYLLSPRGQQVLSREARLMPILPAAGGRGGSAQPPFRPI PLGPGLLVYLDKLKRRQFLDAWRASTQPPR >Mature_350_residues MMRAMWMLLLLLVHGLACAAPGDVRRFPAQGPVRVQLRVQGSTDLEVFGAVIRDYQRLHPGTEVIYEDVIAWDIYDRYLH PGHGAPAADMLISASMDLQTKLVNDGHALAHRSAQTEALPAWAQWRHEVFGISYEPVAIVYNTRKLDAARVPRTRRQLLA LLRAPDAPLRGKVGTYDVERSGVGYLFATQDGQVGSIAGALLAALGANRVVLEERTGSLLDRVSRGELLLAYNVLGSYAQ ARIDAGAPLGIVQPQDYTLVALRTAVIPKTAPHAPEARRFLDYLLSPRGQQVLSREARLMPILPAAGGRGGSAQPPFRPI PLGPGLLVYLDKLKRRQFLDAWRASTQPPR
Specific function: Unknown
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38389; Mature: 38389
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRAMWMLLLLLVHGLACAAPGDVRRFPAQGPVRVQLRVQGSTDLEVFGAVIRDYQRLHP CHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC GTEVIYEDVIAWDIYDRYLHPGHGAPAADMLISASMDLQTKLVNDGHALAHRSAQTEALP CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEHCCCCCHHHHHCCCCCCCCC AWAQWRHEVFGISYEPVAIVYNTRKLDAARVPRTRRQLLALLRAPDAPLRGKVGTYDVER HHHHHHHHHCCCCCCCEEEEEECCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEECC SGVGYLFATQDGQVGSIAGALLAALGANRVVLEERTGSLLDRVSRGELLLAYNVLGSYAQ CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCEEEEHHHHHHHHH ARIDAGAPLGIVQPQDYTLVALRTAVIPKTAPHAPEARRFLDYLLSPRGQQVLSREARLM HHCCCCCCCCEECCCCCEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCEE PILPAAGGRGGSAQPPFRPIPLGPGLLVYLDKLKRRQFLDAWRASTQPPR EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MMRAMWMLLLLLVHGLACAAPGDVRRFPAQGPVRVQLRVQGSTDLEVFGAVIRDYQRLHP CHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC GTEVIYEDVIAWDIYDRYLHPGHGAPAADMLISASMDLQTKLVNDGHALAHRSAQTEALP CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEHCCCCCHHHHHCCCCCCCCC AWAQWRHEVFGISYEPVAIVYNTRKLDAARVPRTRRQLLALLRAPDAPLRGKVGTYDVER HHHHHHHHHCCCCCCCEEEEEECCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEECC SGVGYLFATQDGQVGSIAGALLAALGANRVVLEERTGSLLDRVSRGELLLAYNVLGSYAQ CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCEEEEHHHHHHHHH ARIDAGAPLGIVQPQDYTLVALRTAVIPKTAPHAPEARRFLDYLLSPRGQQVLSREARLM HHCCCCCCCCEECCCCCEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCEE PILPAAGGRGGSAQPPFRPIPLGPGLLVYLDKLKRRQFLDAWRASTQPPR EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA