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The map label for this gene is 78049096

Identifier: 78049096

GI number: 78049096

Start: 4054654

End: 4055079

Strand: Reverse

Name: 78049096

Synonym: XCV3540

Alternate gene names: NA

Gene position: 4055079-4054654 (Counterclockwise)

Preceding gene: 78049097

Following gene: 78049095

Centisome position: 78.31

GC content: 65.49

Gene sequence:

>426_bases
ATGAGTCTGCTGCCAAGAGCGTGCGGCGCCACTGTTGCGCTCGCCATTCTCGCCTTGTTGGTGCCGCCCAACGTGCGCGA
TGCGCAGGCGCAGAGTTCCGATGCCACACAGCTGTTTCCGCAGCAAGGCTTCGCCAAGGCCTCCGGCCAGGACGTTTACC
AGGCGATCTGCCAGGGTTGCCATATGCCGGCCGGGCGTGGCGCGCAAGGTGCCGGCGACTATCCTGCGCTTGCCAGCAAC
CCGAAACTGGCCGCCGGCCCGTACGTGACGATGATGGTGCTCGACGGCCACGCGGGGATGCCGGGTTTCGCCGACATGCT
CGACGACCGCCAGGTGGCCGAAGTGGTGAGCTATGTGCGCACGCACTTCGGTAACGACTATGCCGAGCGCGTGACCATCG
ACGATGTCAGATCACTCCGCCGCTGA

Upstream 100 bases:

>100_bases
ACGTGTCGTACATTCCGGCCTGGCAGGAGGGTGCCATTCTGTCGGCGCACGATGTCGTTGGCCGCCTGCATCGCAAGGTC
ATTGCCCAGGGAGGGCGCGC

Downstream 100 bases:

>100_bases
TCTTCTCTCCTACAAGGAATTGCCATGCTCCGTTCCATCACGACCGTTCTCACCGCCGCAGTGCTTTGGTCTTCCAGTCT
CGGTGCCGCACACGCGGCCG

Product: putative cytochrome C precursor

Products: NA

Alternate protein names: Cytochrome C Family Protein; Cytochrome C; TdcF Protein

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MSLLPRACGATVALAILALLVPPNVRDAQAQSSDATQLFPQQGFAKASGQDVYQAICQGCHMPAGRGAQGAGDYPALASN
PKLAAGPYVTMMVLDGHAGMPGFADMLDDRQVAEVVSYVRTHFGNDYAERVTIDDVRSLRR

Sequences:

>Translated_141_residues
MSLLPRACGATVALAILALLVPPNVRDAQAQSSDATQLFPQQGFAKASGQDVYQAICQGCHMPAGRGAQGAGDYPALASN
PKLAAGPYVTMMVLDGHAGMPGFADMLDDRQVAEVVSYVRTHFGNDYAERVTIDDVRSLRR
>Mature_140_residues
SLLPRACGATVALAILALLVPPNVRDAQAQSSDATQLFPQQGFAKASGQDVYQAICQGCHMPAGRGAQGAGDYPALASNP
KLAAGPYVTMMVLDGHAGMPGFADMLDDRQVAEVVSYVRTHFGNDYAERVTIDDVRSLRR

Specific function: Unknown

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14922; Mature: 14791

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLPRACGATVALAILALLVPPNVRDAQAQSSDATQLFPQQGFAKASGQDVYQAICQGC
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHC
HMPAGRGAQGAGDYPALASNPKLAAGPYVTMMVLDGHAGMPGFADMLDDRQVAEVVSYVR
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHH
THFGNDYAERVTIDDVRSLRR
HHHCCHHHHHCCHHHHHHHCC
>Mature Secondary Structure 
SLLPRACGATVALAILALLVPPNVRDAQAQSSDATQLFPQQGFAKASGQDVYQAICQGC
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHC
HMPAGRGAQGAGDYPALASNPKLAAGPYVTMMVLDGHAGMPGFADMLDDRQVAEVVSYVR
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHH
THFGNDYAERVTIDDVRSLRR
HHHCCHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA