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The map label for this gene is yjgF [C]

Identifier: 78049065

GI number: 78049065

Start: 4021930

End: 4022310

Strand: Reverse

Name: yjgF [C]

Synonym: XCV3509

Alternate gene names: 78049065

Gene position: 4022310-4021930 (Counterclockwise)

Preceding gene: 78049066

Following gene: 78049064

Centisome position: 77.67

GC content: 65.09

Gene sequence:

>381_bases
ATGTCCCAGATCATCCATACCGACCAGGCGCCTGCCGCCATCGGCCCGTATTCGCAGGCCGTGCGTGCCGGCAACACCGT
GTATTTCTCCGGGCAGATCCCGCTGGACCCGGCCACCGGCGAGATCGTGCCGGGCGACATCGGTGCGCAGGCACGCCGTG
CATTCGACAACCTCAAGGCGGTGGCCGAAGCGGCCGGCGGCTCGCTCGACAAGATCGTGCGTCTGGGTCTGTATCTGACC
GACCTGGGGCAGTTCGCTGCAGTCAACGCGGTGATGCAGGAGTATTTCCAGGCACCGTTCCCGGCGCGTTCGACCATCGA
AGTCTCCGGTCTGCCCAAGGGCGCCGGCTTCGAAGTCGATGCAGTGATGGTGATCGAGTGA

Upstream 100 bases:

>100_bases
CAGAGCGTCGGACGCCAGTAGCGCCTGGCGCACTCGCGCAACAGTCGAGCAAATCCGCACAAAGGCCTAAACTGCGGTAA
CCCTTTGCAGTGGAGTGTCC

Downstream 100 bases:

>100_bases
TCCTGCGCCGCTGATCGGCCGTGTCGCGCACGCGCGTCGTCACACCGAGTCTGGCCGTCGCCGGCCAGGCTCGGCTGTCC
AGCCTGCCCGGTGTCGGCCC

Product: translation initiation inhibitor

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MSQIIHTDQAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGEIVPGDIGAQARRAFDNLKAVAEAAGGSLDKIVRLGLYLT
DLGQFAAVNAVMQEYFQAPFPARSTIEVSGLPKGAGFEVDAVMVIE

Sequences:

>Translated_126_residues
MSQIIHTDQAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGEIVPGDIGAQARRAFDNLKAVAEAAGGSLDKIVRLGLYLT
DLGQFAAVNAVMQEYFQAPFPARSTIEVSGLPKGAGFEVDAVMVIE
>Mature_125_residues
SQIIHTDQAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGEIVPGDIGAQARRAFDNLKAVAEAAGGSLDKIVRLGLYLTD
LGQFAAVNAVMQEYFQAPFPARSTIEVSGLPKGAGFEVDAVMVIE

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=124, Percent_Identity=40.3225806451613, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=50.3937007874016, Blast_Score=127, Evalue=3e-31,
Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=45.6692913385827, Blast_Score=118, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=46.7213114754098, Blast_Score=115, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=46.7213114754098, Blast_Score=115, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=46.7213114754098, Blast_Score=115, Evalue=5e-27,
Organism=Saccharomyces cerevisiae, GI6322138, Length=120, Percent_Identity=38.3333333333333, Blast_Score=92, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=37.2549019607843, Blast_Score=88, Evalue=3e-19,
Organism=Drosophila melanogaster, GI19921376, Length=122, Percent_Identity=40.9836065573771, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13180; Mature: 13049

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIIHTDQAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGEIVPGDIGAQARRAFDNLKA
CCCCCCCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VAEAAGGSLDKIVRLGLYLTDLGQFAAVNAVMQEYFQAPFPARSTIEVSGLPKGAGFEVD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEE
AVMVIE
EEEEEC
>Mature Secondary Structure 
SQIIHTDQAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGEIVPGDIGAQARRAFDNLKA
CCCCCCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VAEAAGGSLDKIVRLGLYLTDLGQFAAVNAVMQEYFQAPFPARSTIEVSGLPKGAGFEVD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEE
AVMVIE
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]