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The map label for this gene is yfjY [C]

Identifier: 78048960

GI number: 78048960

Start: 3891681

End: 3892244

Strand: Reverse

Name: yfjY [C]

Synonym: XCV3404

Alternate gene names: 78048960

Gene position: 3892244-3891681 (Counterclockwise)

Preceding gene: 78048961

Following gene: 78048951

Centisome position: 75.16

GC content: 62.59

Gene sequence:

>564_bases
GTGCTCGCTATCGGGTGCGGTAGGGCCGGACGCTTCGCCTGTCGGTTCCCACGAGGCGCACAACGCGCTGGTGGAGAAGA
ACCGATGAAGCGCACCCAAGACCTGAAGGCTCAATACCAACTCCAGATGGACGAGGAGGGCATCTTGCTCGCAGCAGCCA
CCATCCTGGAACAACGCCTTCAACGGCAAGGCAAGATCCACAGCCCCGACCAAGCTGGCGACTACCTGATTTCCCGCTGC
GCTCACCTGCCGCACGAAGTCTTCGGGGTCGTCTTCCTGGACATCAAGCACCAGATCTTGGCGACCGAGCACCTCTTCTT
CGGCACCATCGACGGCTGCGAGGTGCACCCTCGGGTGGTCGCCAAGCGCGCCCTGGATTTGAACGCCGCTGCCGTCATCC
TGTTTCATAATCACCCAAGCGGCAATCCGGAGCCAAGCGAAGCCGACCGCAAGGTCACCGAGCGCCTGCAGAAGGCATTG
AGCCTCCTCGACATCCGGGTGCTGGACCACCTGGTGATCGGCGGGCGTCAGCACATCAGCCTTGCAGCAAGAGGGTGGGC
GTAG

Upstream 100 bases:

>100_bases
TCTGAAAGGGACCTTAGCTTCGCTGTCCCGACCGCAAGGACAGGCCTCCTTCTCGTCGCTGGCGCTTTGTTGCGGCCCTT
CACTGTGCGCCGCTTGCGCG

Downstream 100 bases:

>100_bases
CCCTCCCTCTCTTGGGTCTTTACTGCGCAAACGATGAGATTGCGCAGCGTCAGACAGGTGTGTTCAACCTCGCAAGCTGC
GCATTGACCTCAATGGTCTG

Product: RadC family DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MLAIGCGRAGRFACRFPRGAQRAGGEEPMKRTQDLKAQYQLQMDEEGILLAAATILEQRLQRQGKIHSPDQAGDYLISRC
AHLPHEVFGVVFLDIKHQILATEHLFFGTIDGCEVHPRVVAKRALDLNAAAVILFHNHPSGNPEPSEADRKVTERLQKAL
SLLDIRVLDHLVIGGRQHISLAARGWA

Sequences:

>Translated_187_residues
MLAIGCGRAGRFACRFPRGAQRAGGEEPMKRTQDLKAQYQLQMDEEGILLAAATILEQRLQRQGKIHSPDQAGDYLISRC
AHLPHEVFGVVFLDIKHQILATEHLFFGTIDGCEVHPRVVAKRALDLNAAAVILFHNHPSGNPEPSEADRKVTERLQKAL
SLLDIRVLDHLVIGGRQHISLAARGWA
>Mature_187_residues
MLAIGCGRAGRFACRFPRGAQRAGGEEPMKRTQDLKAQYQLQMDEEGILLAAATILEQRLQRQGKIHSPDQAGDYLISRC
AHLPHEVFGVVFLDIKHQILATEHLFFGTIDGCEVHPRVVAKRALDLNAAAVILFHNHPSGNPEPSEADRKVTERLQKAL
SLLDIRVLDHLVIGGRQHISLAARGWA

Specific function: Unknown

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI1788997, Length=135, Percent_Identity=50.3703703703704, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI87082300, Length=141, Percent_Identity=41.8439716312057, Blast_Score=127, Evalue=4e-31,
Organism=Escherichia coli, GI1788312, Length=142, Percent_Identity=48.5915492957746, Blast_Score=122, Evalue=1e-29,
Organism=Escherichia coli, GI2367100, Length=112, Percent_Identity=55.3571428571429, Blast_Score=120, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 20706; Mature: 20706

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAIGCGRAGRFACRFPRGAQRAGGEEPMKRTQDLKAQYQLQMDEEGILLAAATILEQRL
CEEEECCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHH
QRQGKIHSPDQAGDYLISRCAHLPHEVFGVVFLDIKHQILATEHLFFGTIDGCEVHPRVV
HHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHH
AKRALDLNAAAVILFHNHPSGNPEPSEADRKVTERLQKALSLLDIRVLDHLVIGGRQHIS
HHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEE
LAARGWA
EEECCCC
>Mature Secondary Structure
MLAIGCGRAGRFACRFPRGAQRAGGEEPMKRTQDLKAQYQLQMDEEGILLAAATILEQRL
CEEEECCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHH
QRQGKIHSPDQAGDYLISRCAHLPHEVFGVVFLDIKHQILATEHLFFGTIDGCEVHPRVV
HHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHH
AKRALDLNAAAVILFHNHPSGNPEPSEADRKVTERLQKALSLLDIRVLDHLVIGGRQHIS
HHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEE
LAARGWA
EEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA