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The map label for this gene is virB6

Identifier: 78048946

GI number: 78048946

Start: 3875732

End: 3876868

Strand: Reverse

Name: virB6

Synonym: XCV3390

Alternate gene names: NA

Gene position: 3876868-3875732 (Counterclockwise)

Preceding gene: 78048947

Following gene: 78048945

Centisome position: 74.87

GC content: 56.29

Gene sequence:

>1137_bases
ATGGACGCAATTCTCCACGGAGCGATGAACTGGTTGCAGCCTTTGGCGGATATCGGCCTCGGTGAGTTCGTTTTCTTCAA
ACTGGTCAACGACTACTTCAGCAACGAGATTCAAGAGTTCGGCTTGGAGTTGATGAGCCGCGCTATGAGGTGGGTCAGTA
CGATCGCTTTGACAGTGACCACTCTGTGGGTACTGATTCTGGGCTATCGCATCGCAACCGGGCAGTCGCGTGAAAGTGCA
ATGGCGACCATGATCAAGGCCGGCAAGGTCGCGATCATCATCAGCCTTGCTTCAGCTGTCGGGGTCAATGGCGCAATGCT
GCACCAGACCATGACCCAAAACCTGGACAAGGAGATCCACGGCCTGTTCACGGGTGATGAAGACAGCACCGCCTCCGATG
CAATCGACGAAAATCTTGCCTACACGCAGATAGCGCTGACCGCGCTGGATGCGGTGCGCGTCGACCCAACCGATCCAGAG
GCAATAGAGAAGAAAGGCCGCGCTGTATTGATGGCGGGCTTCGGCACCGCCAGTCCGCCGATGGCGGCTGGAGCGATGCT
GCTGTTGTTCAAATTCACCATGGCGTTCCTGATCGGGATCGGGCCAATCTTCATCTTGGCACTGATCTTCGACCAGACCA
AAGACCTGTTCAAGAAGTGGTTGTTCTACGTGATCGGCACGCTGTTCTCGATGGCAATGCTGTCGGTGGTCACGGCGATG
GTGCTGAAATTCACAGCAAAAGTAGCTGCGGCCTACTGGGCTGCCCAACTCATCACATTGGGCAATGCGGAAGGACTGTC
TAGCCAAGCCCTGCAGCAGGGCGGCATCGGACTGATCATGACTGGATTGATCATCAGCGTGCCAACATTGGCCGCAGCGA
TTTGGCAAGGCAATATGGGGACGTTCATGGCATATTCAGCTTTTGATCGTGGCGGCGCGGCAAGTCCTGGGCCGCAGGGG
CAGCCTGCTGGGTCGTATATGCCGCAGCGAACCGCTCCCAGCTCTGACAGGGCGGACGATAGTATTCAGAGGACAACTAG
CGCAGTAACCAAAACGATTGCTGGCGCAGATTCCACTGAGACAGCCGCTATCGGCTCACGCGGATTGGCTGGACAAAACC
CTCGGAATCAAGTTTAG

Upstream 100 bases:

>100_bases
AATAGCTGGCTCAAACCGCTGGGACAGCTCGTGCAGGCCGCAACGCTGAAAGCCGCGTTATCCAATTGATCGCTACACCA
CGACAGACAGGCAGAAGGTA

Downstream 100 bases:

>100_bases
TTATCCAAATCGATTTGCCTGAAAGCGGTTTAGATAGATATGAAAAATAATTTCTTGGTGGCTTTTGCGCTTTTGATGGG
GGCTGCCAGTCATAATGCTC

Product: type IV secretion system protein VirB6

Products: NA

Alternate protein names: Type IV Secretion System; VirB6-Like Membrane Protein; Virb6 Protein; TrbL/VirB6 Plasmid Conjugal Transfer Protein; Type IV Secretion System Transmembrane Protein

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDAILHGAMNWLQPLADIGLGEFVFFKLVNDYFSNEIQEFGLELMSRAMRWVSTIALTVTTLWVLILGYRIATGQSRESA
MATMIKAGKVAIIISLASAVGVNGAMLHQTMTQNLDKEIHGLFTGDEDSTASDAIDENLAYTQIALTALDAVRVDPTDPE
AIEKKGRAVLMAGFGTASPPMAAGAMLLLFKFTMAFLIGIGPIFILALIFDQTKDLFKKWLFYVIGTLFSMAMLSVVTAM
VLKFTAKVAAAYWAAQLITLGNAEGLSSQALQQGGIGLIMTGLIISVPTLAAAIWQGNMGTFMAYSAFDRGGAASPGPQG
QPAGSYMPQRTAPSSDRADDSIQRTTSAVTKTIAGADSTETAAIGSRGLAGQNPRNQV

Sequences:

>Translated_378_residues
MDAILHGAMNWLQPLADIGLGEFVFFKLVNDYFSNEIQEFGLELMSRAMRWVSTIALTVTTLWVLILGYRIATGQSRESA
MATMIKAGKVAIIISLASAVGVNGAMLHQTMTQNLDKEIHGLFTGDEDSTASDAIDENLAYTQIALTALDAVRVDPTDPE
AIEKKGRAVLMAGFGTASPPMAAGAMLLLFKFTMAFLIGIGPIFILALIFDQTKDLFKKWLFYVIGTLFSMAMLSVVTAM
VLKFTAKVAAAYWAAQLITLGNAEGLSSQALQQGGIGLIMTGLIISVPTLAAAIWQGNMGTFMAYSAFDRGGAASPGPQG
QPAGSYMPQRTAPSSDRADDSIQRTTSAVTKTIAGADSTETAAIGSRGLAGQNPRNQV
>Mature_378_residues
MDAILHGAMNWLQPLADIGLGEFVFFKLVNDYFSNEIQEFGLELMSRAMRWVSTIALTVTTLWVLILGYRIATGQSRESA
MATMIKAGKVAIIISLASAVGVNGAMLHQTMTQNLDKEIHGLFTGDEDSTASDAIDENLAYTQIALTALDAVRVDPTDPE
AIEKKGRAVLMAGFGTASPPMAAGAMLLLFKFTMAFLIGIGPIFILALIFDQTKDLFKKWLFYVIGTLFSMAMLSVVTAM
VLKFTAKVAAAYWAAQLITLGNAEGLSSQALQQGGIGLIMTGLIISVPTLAAAIWQGNMGTFMAYSAFDRGGAASPGPQG
QPAGSYMPQRTAPSSDRADDSIQRTTSAVTKTIAGADSTETAAIGSRGLAGQNPRNQV

Specific function: Unknown

COG id: COG3704

COG function: function code U; Type IV secretory pathway, VirB6 components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40126; Mature: 40126

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAILHGAMNWLQPLADIGLGEFVFFKLVNDYFSNEIQEFGLELMSRAMRWVSTIALTVT
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLWVLILGYRIATGQSRESAMATMIKAGKVAIIISLASAVGVNGAMLHQTMTQNLDKEIH
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHHHH
GLFTGDEDSTASDAIDENLAYTQIALTALDAVRVDPTDPEAIEKKGRAVLMAGFGTASPP
HCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEECCCCCCCC
MAAGAMLLLFKFTMAFLIGIGPIFILALIFDQTKDLFKKWLFYVIGTLFSMAMLSVVTAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLKFTAKVAAAYWAAQLITLGNAEGLSSQALQQGGIGLIMTGLIISVPTLAAAIWQGNMG
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
TFMAYSAFDRGGAASPGPQGQPAGSYMPQRTAPSSDRADDSIQRTTSAVTKTIAGADSTE
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
TAAIGSRGLAGQNPRNQV
HHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MDAILHGAMNWLQPLADIGLGEFVFFKLVNDYFSNEIQEFGLELMSRAMRWVSTIALTVT
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLWVLILGYRIATGQSRESAMATMIKAGKVAIIISLASAVGVNGAMLHQTMTQNLDKEIH
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHHHH
GLFTGDEDSTASDAIDENLAYTQIALTALDAVRVDPTDPEAIEKKGRAVLMAGFGTASPP
HCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEECCCCCCCC
MAAGAMLLLFKFTMAFLIGIGPIFILALIFDQTKDLFKKWLFYVIGTLFSMAMLSVVTAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLKFTAKVAAAYWAAQLITLGNAEGLSSQALQQGGIGLIMTGLIISVPTLAAAIWQGNMG
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
TFMAYSAFDRGGAASPGPQGQPAGSYMPQRTAPSSDRADDSIQRTTSAVTKTIAGADSTE
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
TAAIGSRGLAGQNPRNQV
HHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA