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The map label for this gene is yjfJ [H]

Identifier: 78048713

GI number: 78048713

Start: 3579394

End: 3580167

Strand: Reverse

Name: yjfJ [H]

Synonym: XCV3157

Alternate gene names: 78048713

Gene position: 3580167-3579394 (Counterclockwise)

Preceding gene: 78048714

Following gene: 78048712

Centisome position: 69.14

GC content: 66.67

Gene sequence:

>774_bases
ATGAGTATCTTTTCCAAGCTGATCACGCTGCTGCGTGGTACCGCACACGAAACCGGCCAGAAGGCCGTCGACGCCAATGC
GCTGCGCATCCTGGATCAGGAAATGCGCGATGCCGGCGCCCAGCTCACGCGCTCGCGCGAAGAGCTCACCAAGCTGATGG
CGCAGAGCAAGCTGGCCCAGCAGAAGATCGACGCACGCGCCGGCAAGATGGCCGAATACACGCGCTACATCGAAGGCGCG
CTGGCCAAGAACGATGAAGCGCTGGCACACGATGTGGCGGTCAAGCTGGCCGCCCTGGAAAGCGAGGATGCCGGCGACAA
GGCCTCCAAGACCGCGCTGGACCAGTCGGTGGTGACGCTCAAGGCCACCATCCAGAAGACCGAGAACCAGCTGCGCGGCA
TGCGCCAGCAGATCGATACGGTCAAGGCCACCGACGCGGTGCAGAAGGCGCAGGCCGCCATTGCCGCGCGCCACTCCGGC
GCCAGCAGCAAGATGGGCTCGGCGCTGGAATCGCTGGAGCGCATCAAGGCGCGCCAGGCCGAAACCTCGGCGCGCATCGA
ATCGGCCGAAGAACTCGAAGCGTCCACCGGCGATGGCGATCTCAATCGGCGCCTGGCGGCGGCCGGCCTGATGGAAGGCG
AATCCAACGCCGCTGCGGTGCTGGCACGCTTCAAGAAGCCGGCCGCGCAGCTGGGTCACGAGAACGCCGGCGGCACCGCG
CCGCTGATTGGCCAGGTGCGCGACGTGCAGCAGGTTCCGCGCAGCGACAGCTGA

Upstream 100 bases:

>100_bases
AACGCTCGACCAGATCGACGAAGAAATCCAGACCCTGGCGGCCAATACGTTGGATGCCGCCGAATCTCTCAAGCCGTTCT
TTTCCTAAAGGCGTGTTGTC

Downstream 100 bases:

>100_bases
TCCATCGCACGGCACAGGATGCGCCATGATCATCGTTGGACGGCTGTTGCGGGTCCTGCGGCGCCACGTGCGCCGCGTCA
GCTGGGGCATGGTGGCGCTG

Product: putative PspA/IM30 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSIFSKLITLLRGTAHETGQKAVDANALRILDQEMRDAGAQLTRSREELTKLMAQSKLAQQKIDARAGKMAEYTRYIEGA
LAKNDEALAHDVAVKLAALESEDAGDKASKTALDQSVVTLKATIQKTENQLRGMRQQIDTVKATDAVQKAQAAIAARHSG
ASSKMGSALESLERIKARQAETSARIESAEELEASTGDGDLNRRLAAAGLMEGESNAAAVLARFKKPAAQLGHENAGGTA
PLIGQVRDVQQVPRSDS

Sequences:

>Translated_257_residues
MSIFSKLITLLRGTAHETGQKAVDANALRILDQEMRDAGAQLTRSREELTKLMAQSKLAQQKIDARAGKMAEYTRYIEGA
LAKNDEALAHDVAVKLAALESEDAGDKASKTALDQSVVTLKATIQKTENQLRGMRQQIDTVKATDAVQKAQAAIAARHSG
ASSKMGSALESLERIKARQAETSARIESAEELEASTGDGDLNRRLAAAGLMEGESNAAAVLARFKKPAAQLGHENAGGTA
PLIGQVRDVQQVPRSDS
>Mature_256_residues
SIFSKLITLLRGTAHETGQKAVDANALRILDQEMRDAGAQLTRSREELTKLMAQSKLAQQKIDARAGKMAEYTRYIEGAL
AKNDEALAHDVAVKLAALESEDAGDKASKTALDQSVVTLKATIQKTENQLRGMRQQIDTVKATDAVQKAQAAIAARHSGA
SSKMGSALESLERIKARQAETSARIESAEELEASTGDGDLNRRLAAAGLMEGESNAAAVLARFKKPAAQLGHENAGGTAP
LIGQVRDVQQVPRSDS

Specific function: Unknown

COG id: COG1842

COG function: function code KT; Phage shock protein A (IM30), suppresses sigma54-dependent transcription

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PspA/IM30 family [H]

Homologues:

Organism=Escherichia coli, GI1790625, Length=231, Percent_Identity=33.7662337662338, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007157 [H]

Pfam domain/function: PF04012 PspA_IM30 [H]

EC number: NA

Molecular weight: Translated: 27374; Mature: 27243

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIFSKLITLLRGTAHETGQKAVDANALRILDQEMRDAGAQLTRSREELTKLMAQSKLAQ
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKIDARAGKMAEYTRYIEGALAKNDEALAHDVAVKLAALESEDAGDKASKTALDQSVVTL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
KATIQKTENQLRGMRQQIDTVKATDAVQKAQAAIAARHSGASSKMGSALESLERIKARQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
ETSARIESAEELEASTGDGDLNRRLAAAGLMEGESNAAAVLARFKKPAAQLGHENAGGTA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
PLIGQVRDVQQVPRSDS
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SIFSKLITLLRGTAHETGQKAVDANALRILDQEMRDAGAQLTRSREELTKLMAQSKLAQ
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKIDARAGKMAEYTRYIEGALAKNDEALAHDVAVKLAALESEDAGDKASKTALDQSVVTL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
KATIQKTENQLRGMRQQIDTVKATDAVQKAQAAIAARHSGASSKMGSALESLERIKARQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
ETSARIESAEELEASTGDGDLNRRLAAAGLMEGESNAAAVLARFKKPAAQLGHENAGGTA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
PLIGQVRDVQQVPRSDS
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]