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The map label for this gene is pel1 [H]

Identifier: 78048688

GI number: 78048688

Start: 3551643

End: 3552590

Strand: Reverse

Name: pel1 [H]

Synonym: XCV3132

Alternate gene names: 78048688

Gene position: 3552590-3551643 (Counterclockwise)

Preceding gene: 78048690

Following gene: 78048687

Centisome position: 68.6

GC content: 59.6

Gene sequence:

>948_bases
ATGATCATCAAGACGCTACACGGCGCACTCGCGCTTGCACTGTCCGCTTGCGCCGCGGGCGCGATTGCCGGCCCGGTCGG
TTACGGTGCGGCCACTACCGGCGGCGGCGGCAAGACACCAGTTAACGTGGCGACGTTCGAAGCAGTGCAGGCCGCCATCG
ACAACTATTCCGGTAGCGGCGGGCTGGTGCTCAACTACACCGGCCAGTTCGACTTCGGCACCATCAAGGACGTGTGCGCG
CAATGGAAGCTGCCGGCCAAGACCGTGCAGATCAAGAACAAGAGCGATGTCACCATCAAGGGCGCCAATGGTTCGTCGGC
GAACTTCGGCGTGCGTGTGGTAGGCAATGCGCACAACGTGATCATCCAGAACATGACCATTGGCTTGCTGCAAGGCGGCG
AAGATGCCGATTCGATTTCGCTGGAAGGCAACTCCAGCGGCGAGCCGTCCAAGATCTGGATCGACCACAACACCATCTTC
GCCTCGCTCACCAAGTGCTCCGGTGCAGGCGATGCCTCCTTCGATGGCGGCATCGACATGAAGAAGGGCGTGCACCACGT
CACCGTGTCCTACAACTATGTCTACAACTATCAAAAGGTCGCGCTCAATGGCTACAGCGACAGCGACACCAAGAACTCGG
CTGCGCGCACCACGTATCACCACAACCGCTTCGAGAACGTGGAATCGCGCTTGCCATTGCAGCGCCGCGGCTTGAGCCAC
ATCTACAACAACTACTTCAGCAATGTGTTTACCTCGGGCATCAACGTGCGCATGGGTGGGGTGGCCAAGATCGAGTCCAA
CTACTTCGAGAACATCAAGAACCCTGTGACTTCGCGCGACAGCAGCGAGATCGGCTACTGGGACCTGATCAACAACTACG
TTGGCAGCGGCATCACCTGGAGCACGCCGGACGGCAGCAAGCCCTACGCCATGCCACCAACTGGGTGA

Upstream 100 bases:

>100_bases
ATCGCGCGAAGAATGCAGCCCCCCACGCATCGCCTTGCCGTTGTCGTCGCCACTGCGCAGACGGCCGGCATTGCTTGTCG
ACTTCATTGGGAGAGGCTCC

Downstream 100 bases:

>100_bases
GCTCCAAGGTGTTCCCGGAGTCGCTGGGCTACATCTACACCGTGACGCCGGCAGCACAGGTCAAGGCCAAGGTGATCGCC
ACCGCGGGTGCGGGCAAGAA

Product: Pectate lyase precursor

Products: NA

Alternate protein names: Pectate lyase B; PLB; Pectate lyase II; PEL II [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MIIKTLHGALALALSACAAGAIAGPVGYGAATTGGGGKTPVNVATFEAVQAAIDNYSGSGGLVLNYTGQFDFGTIKDVCA
QWKLPAKTVQIKNKSDVTIKGANGSSANFGVRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWIDHNTIF
ASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRLPLQRRGLSH
IYNNYFSNVFTSGINVRMGGVAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITWSTPDGSKPYAMPPTG

Sequences:

>Translated_315_residues
MIIKTLHGALALALSACAAGAIAGPVGYGAATTGGGGKTPVNVATFEAVQAAIDNYSGSGGLVLNYTGQFDFGTIKDVCA
QWKLPAKTVQIKNKSDVTIKGANGSSANFGVRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWIDHNTIF
ASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRLPLQRRGLSH
IYNNYFSNVFTSGINVRMGGVAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITWSTPDGSKPYAMPPTG
>Mature_315_residues
MIIKTLHGALALALSACAAGAIAGPVGYGAATTGGGGKTPVNVATFEAVQAAIDNYSGSGGLVLNYTGQFDFGTIKDVCA
QWKLPAKTVQIKNKSDVTIKGANGSSANFGVRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWIDHNTIF
ASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRLPLQRRGLSH
IYNNYFSNVFTSGINVRMGGVAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITWSTPDGSKPYAMPPTG

Specific function: Involved in maceration and soft-rotting of plant tissue [H]

COG id: COG3866

COG function: function code G; Pectate lyase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide lyase 1 family. PLADES subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002022
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF00544 Pec_lyase_C [H]

EC number: =4.2.2.2 [H]

Molecular weight: Translated: 33412; Mature: 33412

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIKTLHGALALALSACAAGAIAGPVGYGAATTGGGGKTPVNVATFEAVQAAIDNYSGSG
CEEEHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
GLVLNYTGQFDFGTIKDVCAQWKLPAKTVQIKNKSDVTIKGANGSSANFGVRVVGNAHNV
CEEEEECCCCCCCHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCCCCEEEECCCCEE
IIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWIDHNTIFASLTKCSGAGDASFDGGIDM
EEEEEEEEEEECCCCCCEEEECCCCCCCCCEEEEECCEEEEEEHHCCCCCCCCCCCCCCC
KKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRLPLQRRGLSH
CCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
IYNNYFSNVFTSGINVRMGGVAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITW
HHHHHHHHHHHCCCEEEECCEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEE
STPDGSKPYAMPPTG
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MIIKTLHGALALALSACAAGAIAGPVGYGAATTGGGGKTPVNVATFEAVQAAIDNYSGSG
CEEEHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
GLVLNYTGQFDFGTIKDVCAQWKLPAKTVQIKNKSDVTIKGANGSSANFGVRVVGNAHNV
CEEEEECCCCCCCHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCCCCEEEECCCCEE
IIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWIDHNTIFASLTKCSGAGDASFDGGIDM
EEEEEEEEEEECCCCCCEEEECCCCCCCCCEEEEECCEEEEEEHHCCCCCCCCCCCCCCC
KKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRLPLQRRGLSH
CCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
IYNNYFSNVFTSGINVRMGGVAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITW
HHHHHHHHHHHCCCEEEECCEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEE
STPDGSKPYAMPPTG
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3040692; 7773390 [H]