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The map label for this gene is ybaV [C]

Identifier: 78048652

GI number: 78048652

Start: 3517980

End: 3518387

Strand: Reverse

Name: ybaV [C]

Synonym: XCV3096

Alternate gene names: 78048652

Gene position: 3518387-3517980 (Counterclockwise)

Preceding gene: 78048657

Following gene: 78048651

Centisome position: 67.94

GC content: 57.6

Gene sequence:

>408_bases
ATGTGGCGCGGGACACTGGCTCCGCCGGCAGGAATGCTGGCTAGGACCATCACCCAAGCCACAAGGAGCGTTGCAATGAA
GTCATTTACCGTAGTCCTGAAGTCCCTGCTACTGGCGTTGTTGTTGTCCTCGAATGCGTATGCGCTCGACAAGGTCGATA
TCAACACCGCGTCTGCTGAGGAATTGGACAAGGTGCTGATGAATGTCGGGCGATCAAAAGCCGAGGCAATCGTCGAGCAC
CGTCAGGCAAACGGTCCCTTTAAAAGTGCCGAGGAACTGGCACTGGTCAAGGGCATCGGACTCAAGACGGTCGAACGGAA
TCGCGACCTGATCGAAGTTGGAGCCACGATGGCTCCAGCCAAGAAGGCTGCCAAGGGGGCGGCGGTGAAACCGGTGGGAC
GGCGTTAA

Upstream 100 bases:

>100_bases
CCGCACATTCTACGCCCGCCTCGGGGGGTAGGTATTTCCCTACAAGGCGGCGCGCAGTTCACCGGCTGTGTGAAAAGTTC
GTTGGCGATAGGATTGCTGC

Downstream 100 bases:

>100_bases
GGGGAAGGGATCCGAGATACGGTTCGACGCGAGGATGCGTGGCCGCAACCTAACTGGACAGGATGTCTGGGGGATGGCTG
GAAGCCGACAAGGACGTGGA

Product: ComEA-related DNA uptake protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MWRGTLAPPAGMLARTITQATRSVAMKSFTVVLKSLLLALLLSSNAYALDKVDINTASAEELDKVLMNVGRSKAEAIVEH
RQANGPFKSAEELALVKGIGLKTVERNRDLIEVGATMAPAKKAAKGAAVKPVGRR

Sequences:

>Translated_135_residues
MWRGTLAPPAGMLARTITQATRSVAMKSFTVVLKSLLLALLLSSNAYALDKVDINTASAEELDKVLMNVGRSKAEAIVEH
RQANGPFKSAEELALVKGIGLKTVERNRDLIEVGATMAPAKKAAKGAAVKPVGRR
>Mature_135_residues
MWRGTLAPPAGMLARTITQATRSVAMKSFTVVLKSLLLALLLSSNAYALDKVDINTASAEELDKVLMNVGRSKAEAIVEH
RQANGPFKSAEELALVKGIGLKTVERNRDLIEVGATMAPAKKAAKGAAVKPVGRR

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=57, Percent_Identity=52.6315789473684, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14353; Mature: 14353

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRGTLAPPAGMLARTITQATRSVAMKSFTVVLKSLLLALLLSSNAYALDKVDINTASAE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHH
ELDKVLMNVGRSKAEAIVEHRQANGPFKSAEELALVKGIGLKTVERNRDLIEVGATMAPA
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHCCCHHHH
KKAAKGAAVKPVGRR
HHHHCCCCCCCCCCC
>Mature Secondary Structure
MWRGTLAPPAGMLARTITQATRSVAMKSFTVVLKSLLLALLLSSNAYALDKVDINTASAE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHH
ELDKVLMNVGRSKAEAIVEHRQANGPFKSAEELALVKGIGLKTVERNRDLIEVGATMAPA
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHCCCHHHH
KKAAKGAAVKPVGRR
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]