Definition Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome.
Accession NC_007508
Length 5,178,466

Click here to switch to the map view.

The map label for this gene is 78048633

Identifier: 78048633

GI number: 78048633

Start: 3499535

End: 3500002

Strand: Reverse

Name: 78048633

Synonym: XCV3077

Alternate gene names: NA

Gene position: 3500002-3499535 (Counterclockwise)

Preceding gene: 78048649

Following gene: 78048632

Centisome position: 67.59

GC content: 60.04

Gene sequence:

>468_bases
ATGTCGCGCAAAGTTGCCGCCCGCAAGTCTCGTATCCACGGCAATGGCATGTTCGCCCTCGCCCCGCTCCGCAAGGGCGA
GCGCATCATTCAATACAAGGGGCGGCTGCGCACGCATGCCGAAGTGGATGCCGACGACGCCGGCGACGTGGAAAGCGGGC
ATACCTTTTTGTTCACGCTCAGCGACGACTACGTGCTGGATGCCAACTACGAAGGCAATGTCGCGCGCTGGATCAACCAC
AGCTGCGATCCCAATTGCGAGGCGGTGATCGAAGAAGCCGAGGGCGACGACCGCCGCAAGGACAAGATCTTCATCGAGGC
CAAGCGCGACATCAAACCCGGCGAAGAGCTCACCTATAACTACGGCATCACCCTTGCCGAGCGTCATACGCCACGCCTGA
AGAAAATTTGGGAATGCCGGTGCGGCTCGAAGAATTGCACCGGAACGATGCTGCAACCCAAGCGCTGA

Upstream 100 bases:

>100_bases
GCCGCCGGCAAGCGTGGCCCGTTGCGGCGCACGCTGCGCTTGTGCTTGGCGCAGTGGCGCGCTGCAGTCACAATGAGCGG
CCCCATCACTGGACCCTTAC

Downstream 100 bases:

>100_bases
GCACGCAGCCATGTGCGCGTACTGACGCCGCGCACACATCGGTTCACGGATGCGCAACGGCGTGATTCCTGGGGTCTGGG
CTTCTTTTCAAGGAGCCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: Histone-Lysine N-Methyltransferase; SET Domain-Containing Protein; SET Domain Protein; Set Domain Protein; HistoNe-Lysine N-Methyltransferase H3 Lysine-4 Specific; Setd1a Protein; Nuclear Protein Set; Zinc Finger Protein

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MSRKVAARKSRIHGNGMFALAPLRKGERIIQYKGRLRTHAEVDADDAGDVESGHTFLFTLSDDYVLDANYEGNVARWINH
SCDPNCEAVIEEAEGDDRRKDKIFIEAKRDIKPGEELTYNYGITLAERHTPRLKKIWECRCGSKNCTGTMLQPKR

Sequences:

>Translated_155_residues
MSRKVAARKSRIHGNGMFALAPLRKGERIIQYKGRLRTHAEVDADDAGDVESGHTFLFTLSDDYVLDANYEGNVARWINH
SCDPNCEAVIEEAEGDDRRKDKIFIEAKRDIKPGEELTYNYGITLAERHTPRLKKIWECRCGSKNCTGTMLQPKR
>Mature_154_residues
SRKVAARKSRIHGNGMFALAPLRKGERIIQYKGRLRTHAEVDADDAGDVESGHTFLFTLSDDYVLDANYEGNVARWINHS
CDPNCEAVIEEAEGDDRRKDKIFIEAKRDIKPGEELTYNYGITLAERHTPRLKKIWECRCGSKNCTGTMLQPKR

Specific function: Unknown

COG id: COG2940

COG function: function code R; Proteins containing SET domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI210032580, Length=143, Percent_Identity=35.6643356643357, Blast_Score=89, Evalue=1e-18,
Organism=Homo sapiens, GI55741677, Length=150, Percent_Identity=34, Blast_Score=87, Evalue=7e-18,
Organism=Homo sapiens, GI56550039, Length=143, Percent_Identity=35.6643356643357, Blast_Score=83, Evalue=8e-17,
Organism=Homo sapiens, GI19913358, Length=140, Percent_Identity=35.7142857142857, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI19913350, Length=140, Percent_Identity=35.7142857142857, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI19913348, Length=140, Percent_Identity=35.7142857142857, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI109633019, Length=140, Percent_Identity=35.7142857142857, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI91718902, Length=143, Percent_Identity=34.2657342657343, Blast_Score=80, Evalue=6e-16,
Organism=Homo sapiens, GI7662046, Length=143, Percent_Identity=36.3636363636364, Blast_Score=79, Evalue=1e-15,
Organism=Homo sapiens, GI156142197, Length=137, Percent_Identity=36.4963503649635, Blast_Score=77, Evalue=5e-15,
Organism=Homo sapiens, GI156142199, Length=137, Percent_Identity=36.4963503649635, Blast_Score=77, Evalue=5e-15,
Organism=Homo sapiens, GI21361095, Length=120, Percent_Identity=40, Blast_Score=77, Evalue=5e-15,
Organism=Homo sapiens, GI23510384, Length=120, Percent_Identity=40, Blast_Score=77, Evalue=5e-15,
Organism=Homo sapiens, GI4507321, Length=158, Percent_Identity=29.1139240506329, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI13375930, Length=154, Percent_Identity=30.5194805194805, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI301171597, Length=154, Percent_Identity=30.5194805194805, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI301171588, Length=154, Percent_Identity=30.5194805194805, Blast_Score=74, Evalue=3e-14,
Organism=Homo sapiens, GI19923202, Length=120, Percent_Identity=40, Blast_Score=74, Evalue=4e-14,
Organism=Homo sapiens, GI27477095, Length=145, Percent_Identity=34.4827586206897, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI19923586, Length=145, Percent_Identity=34.4827586206897, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI224465233, Length=142, Percent_Identity=33.0985915492958, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI13699811, Length=150, Percent_Identity=32.6666666666667, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI148762969, Length=143, Percent_Identity=34.2657342657343, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI110349788, Length=141, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=6e-12,
Organism=Homo sapiens, GI301171613, Length=109, Percent_Identity=34.8623853211009, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI301171605, Length=109, Percent_Identity=34.8623853211009, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193210440, Length=148, Percent_Identity=37.1621621621622, Blast_Score=91, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17552316, Length=144, Percent_Identity=36.8055555555556, Blast_Score=90, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17552320, Length=144, Percent_Identity=36.8055555555556, Blast_Score=89, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17552318, Length=144, Percent_Identity=36.8055555555556, Blast_Score=89, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI71993684, Length=142, Percent_Identity=32.3943661971831, Blast_Score=77, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17565204, Length=165, Percent_Identity=29.6969696969697, Blast_Score=76, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI193210201, Length=89, Percent_Identity=37.0786516853933, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI193202392, Length=150, Percent_Identity=34, Blast_Score=66, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI25141373, Length=150, Percent_Identity=34, Blast_Score=66, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6321911, Length=150, Percent_Identity=38.6666666666667, Blast_Score=86, Evalue=3e-18,
Organism=Drosophila melanogaster, GI62472551, Length=143, Percent_Identity=34.965034965035, Blast_Score=87, Evalue=4e-18,
Organism=Drosophila melanogaster, GI17136558, Length=143, Percent_Identity=34.965034965035, Blast_Score=87, Evalue=4e-18,
Organism=Drosophila melanogaster, GI19550181, Length=143, Percent_Identity=34.965034965035, Blast_Score=87, Evalue=4e-18,
Organism=Drosophila melanogaster, GI19550184, Length=143, Percent_Identity=34.965034965035, Blast_Score=87, Evalue=4e-18,
Organism=Drosophila melanogaster, GI17136556, Length=143, Percent_Identity=34.965034965035, Blast_Score=87, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24639197, Length=143, Percent_Identity=37.0629370629371, Blast_Score=87, Evalue=6e-18,
Organism=Drosophila melanogaster, GI28571451, Length=143, Percent_Identity=37.0629370629371, Blast_Score=87, Evalue=6e-18,
Organism=Drosophila melanogaster, GI221331070, Length=123, Percent_Identity=39.0243902439024, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24662251, Length=123, Percent_Identity=39.0243902439024, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI18543183, Length=143, Percent_Identity=34.965034965035, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24647050, Length=148, Percent_Identity=32.4324324324324, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24650756, Length=140, Percent_Identity=33.5714285714286, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17737643, Length=138, Percent_Identity=31.8840579710145, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161078181, Length=151, Percent_Identity=31.1258278145695, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17669; Mature: 17538

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS50280 SET ; PS50868 POST_SET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSRKVAARKSRIHGNGMFALAPLRKGERIIQYKGRLRTHAEVDADDAGDVESGHTFLFTL
CCCCCCCHHHEECCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
SDDYVLDANYEGNVARWINHSCDPNCEAVIEEAEGDDRRKDKIFIEAKRDIKPGEELTYN
CCCEEEECCCCCCHHEEECCCCCCCHHHHEECCCCCCCCCCEEEEEECCCCCCCCCEEEE
YGITLAERHTPRLKKIWECRCGSKNCTGTMLQPKR
CCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRKVAARKSRIHGNGMFALAPLRKGERIIQYKGRLRTHAEVDADDAGDVESGHTFLFTL
CCCCCCHHHEECCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
SDDYVLDANYEGNVARWINHSCDPNCEAVIEEAEGDDRRKDKIFIEAKRDIKPGEELTYN
CCCEEEECCCCCCHHEEECCCCCCCHHHHEECCCCCCCCCCEEEEEECCCCCCCCCEEEE
YGITLAERHTPRLKKIWECRCGSKNCTGTMLQPKR
CCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA