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The map label for this gene is araJ [H]

Identifier: 78048552

GI number: 78048552

Start: 3406128

End: 3407351

Strand: Reverse

Name: araJ [H]

Synonym: XCV2996

Alternate gene names: 78048552

Gene position: 3407351-3406128 (Counterclockwise)

Preceding gene: 78048555

Following gene: 78048551

Centisome position: 65.8

GC content: 69.85

Gene sequence:

>1224_bases
ATGCCCATGTCCAATCTCACCTCTGCGCGTGCGTCGCGCTTTCCGCCGGCATTGCTGGCATTGACCATCGGTGCCTTCGG
CATTGGCACGACCGAATTCGTGATCATGGGGCTGCTGCAGCAGGTGGCCGCCGATCTGGGCGTTTCGCTCAGCGCGGCAG
GCCTGTTGATCAGCGGTTATGCGCTGGGCGTGTTCGTCGGTGCGCCGGTGCTGACCCTGGCCAGCGCACGCCTGCCGCGC
AAGGCGGTGCTGATCGGGCTGATGCTGATCTTCACCGTCGGCAACGTGGCCTGCGCGCTGGCGCCGGACTACACCAGCCT
GATGCTCGCGCGGGTGCTGACGTCGCTGGCCCACGGCACGTTTTTCGGCGTCGGCGCCGTGGTGGCGACGTCGCTGGTGC
CGGCCGAACGCCGTGCATCGGCCATCTCGCTGATGTTCGCCGGGCTGACCGTGGCCACCTTGCTCGGGGTGCCGGCCGGT
GCTTGGCTGGGCCTGCAACTGGGCTGGCGCGCGACCTTCTGGGCGGTGGCAGCGATCGGCGTGCTGGCCACTGCCGCGGT
CGCGGTGTGGGTACCGGCCACGGCAGGTGCTGCCACGCCGGTGTCGTGGCGGCAGGAAGTGGCGGTGTTGCAGCGGGGGC
AGGTGCTGCTGGCGCTGGCGATCACGGTGGTGGGCTACGCCGGCGTGTTCGCGGTGTTCACCTACATCCAGCCGCTGCTG
CTGCAGGTCACCGGCCTTGCGCAATCGGCAGTGTCGCCGGTGCTGCTGGTGTTCGGCGTGGGCATGATCGTCGGCAATCT
GCTCGGTGGCCGGCTGGCAGATCGTCGCCCCACCGCGGCCCTGCTGGGTAGCCTGGCCGCCCTGGTGGTGGTGCTCGGCG
CGCTGGGGTGTGTCCTGCACAGCAAGGCCGCCATGGTGGCCTTTGTCGGGCTATTGGGCGTGGCCGCCTTTGCCACCGTG
GCGCCACTGCAGTTGCGCGTGCTGGAACACGCGCGTGGCGCCGGCCAGAACCTGGCCTCCAGCCTCAACATCGCCGCCTT
CAACCTGGGCAATGCGCTGGGCGCATGGCTGGGTGGCGTGGTGATCGCCACGCAGGCGGGCCTGGCCGCAACGCCCTGGG
TGGCCGCGCTGTTGAGTGCCATCGGGCTGGGCATGGCGCTATGGAGCGTGCAGTTGCAACGCCGCCGCGCGACTGCGCCA
CTGGCCTGTACGCAGATGGGGTGA

Upstream 100 bases:

>100_bases
GGTCCATGCGATTGTCAATGATTGCTTGAAAGTGAATCAGGATAGCAGGGCTTTCTGTAAGTAAACGCAGGGCGCAGGCT
GTGCGCAGTCCTCCCTGGCC

Downstream 100 bases:

>100_bases
GGTGATCGCGCGCTGGTCATTCGCCGGGTTGGCGCAGTGCGCCTCAGGCGGCATTCGAGGCGCATAAACACTGGTTTCGC
GCCCAGCATTCCACAAGCGC

Product: arabinose efflux porter AraJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MPMSNLTSARASRFPPALLALTIGAFGIGTTEFVIMGLLQQVAADLGVSLSAAGLLISGYALGVFVGAPVLTLASARLPR
KAVLIGLMLIFTVGNVACALAPDYTSLMLARVLTSLAHGTFFGVGAVVATSLVPAERRASAISLMFAGLTVATLLGVPAG
AWLGLQLGWRATFWAVAAIGVLATAAVAVWVPATAGAATPVSWRQEVAVLQRGQVLLALAITVVGYAGVFAVFTYIQPLL
LQVTGLAQSAVSPVLLVFGVGMIVGNLLGGRLADRRPTAALLGSLAALVVVLGALGCVLHSKAAMVAFVGLLGVAAFATV
APLQLRVLEHARGAGQNLASSLNIAAFNLGNALGAWLGGVVIATQAGLAATPWVAALLSAIGLGMALWSVQLQRRRATAP
LACTQMG

Sequences:

>Translated_407_residues
MPMSNLTSARASRFPPALLALTIGAFGIGTTEFVIMGLLQQVAADLGVSLSAAGLLISGYALGVFVGAPVLTLASARLPR
KAVLIGLMLIFTVGNVACALAPDYTSLMLARVLTSLAHGTFFGVGAVVATSLVPAERRASAISLMFAGLTVATLLGVPAG
AWLGLQLGWRATFWAVAAIGVLATAAVAVWVPATAGAATPVSWRQEVAVLQRGQVLLALAITVVGYAGVFAVFTYIQPLL
LQVTGLAQSAVSPVLLVFGVGMIVGNLLGGRLADRRPTAALLGSLAALVVVLGALGCVLHSKAAMVAFVGLLGVAAFATV
APLQLRVLEHARGAGQNLASSLNIAAFNLGNALGAWLGGVVIATQAGLAATPWVAALLSAIGLGMALWSVQLQRRRATAP
LACTQMG
>Mature_406_residues
PMSNLTSARASRFPPALLALTIGAFGIGTTEFVIMGLLQQVAADLGVSLSAAGLLISGYALGVFVGAPVLTLASARLPRK
AVLIGLMLIFTVGNVACALAPDYTSLMLARVLTSLAHGTFFGVGAVVATSLVPAERRASAISLMFAGLTVATLLGVPAGA
WLGLQLGWRATFWAVAAIGVLATAAVAVWVPATAGAATPVSWRQEVAVLQRGQVLLALAITVVGYAGVFAVFTYIQPLLL
QVTGLAQSAVSPVLLVFGVGMIVGNLLGGRLADRRPTAALLGSLAALVVVLGALGCVLHSKAAMVAFVGLLGVAAFATVA
PLQLRVLEHARGAGQNLASSLNIAAFNLGNALGAWLGGVVIATQAGLAATPWVAALLSAIGLGMALWSVQLQRRRATAPL
ACTQMG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=376, Percent_Identity=47.3404255319149, Blast_Score=273, Evalue=1e-74,
Organism=Escherichia coli, GI1786595, Length=384, Percent_Identity=34.6354166666667, Blast_Score=214, Evalue=6e-57,
Organism=Escherichia coli, GI145693198, Length=330, Percent_Identity=28.4848484848485, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1787808, Length=382, Percent_Identity=26.4397905759162, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41111; Mature: 40979

Theoretical pI: Translated: 11.84; Mature: 11.84

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMSNLTSARASRFPPALLALTIGAFGIGTTEFVIMGLLQQVAADLGVSLSAAGLLISGY
CCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ALGVFVGAPVLTLASARLPRKAVLIGLMLIFTVGNVACALAPDYTSLMLARVLTSLAHGT
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHH
FFGVGAVVATSLVPAERRASAISLMFAGLTVATLLGVPAGAWLGLQLGWRATFWAVAAIG
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEECHHHHHHHHHHHH
VLATAAVAVWVPATAGAATPVSWRQEVAVLQRGQVLLALAITVVGYAGVFAVFTYIQPLL
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQVTGLAQSAVSPVLLVFGVGMIVGNLLGGRLADRRPTAALLGSLAALVVVLGALGCVLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SKAAMVAFVGLLGVAAFATVAPLQLRVLEHARGAGQNLASSLNIAAFNLGNALGAWLGGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHEEEHHHHHHHHHHHH
VIATQAGLAATPWVAALLSAIGLGMALWSVQLQRRRATAPLACTQMG
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
PMSNLTSARASRFPPALLALTIGAFGIGTTEFVIMGLLQQVAADLGVSLSAAGLLISGY
CCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH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HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]