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The map label for this gene is rlpB [C]

Identifier: 78048492

GI number: 78048492

Start: 3338718

End: 3339362

Strand: Reverse

Name: rlpB [C]

Synonym: XCV2936

Alternate gene names: 78048492

Gene position: 3339362-3338718 (Counterclockwise)

Preceding gene: 78048493

Following gene: 78048491

Centisome position: 64.49

GC content: 66.98

Gene sequence:

>645_bases
ATGATTCGATTTCCTACTGCCTTCGCTGCGTCCCTCGTGCTCGTCTCGAGCCTCACCGCCTGCGGCTTCCATTTGCGCAA
TTCGCTGGCGTTGCCGCCCGACACACCAGCGGTGAAGGTGCAGTCCGCCGTGCAGTACAGCGAGCTGGCCAAGCTGTTGC
GGCGGGGTCTCAAGGCCTCCGGCGCCACTCTGGCTGACGAGGATGCCAAGACCGGCTTTGCGCAGTTGCAGGTGTTGTCC
GAGCGTTGGGGCGATCTGCCGATCGCCATCGACAGCCAGGGCCGTGCACAGGAATACAGCCTGCGCTACGCGGCCATTTT
CACCGTCACCACCGCCAATGGCTCGGTGCTGGTGCCGCAGCAGGTGATCGAGCTCTCGCGCGACTACGTGTCGCCACCGG
TGGATGCCACCGGTACGGCAACCGAGCGCGAAATCCTTGCCGACGAACTGCGCAAGGACATGTCGGCCTCGATCCTGCGT
CGTATCGACAGCGTGGTGCGGGCACGCCTGCAGCGCGGCGAAGGTCTGGAGAGCACGCCGACCGCGCCATTGCCGCCGGC
CCCGACGGCGCCAGCGCAGCCGACCACGACACCCGAATCCAGCGTGCCGGCCTCGTTGCCGCCCGCGCCCACGTCGGGCA
ACTGA

Upstream 100 bases:

>100_bases
GCCGCAGTGTTTCGCGGCGTCCTCTCAAGCCCCGTTCACGCGGTCTCGGGCAGGCTAGCCGCCTGTTGCCGCCGCCGGGG
CGCTCATCCAGACTGTGCCC

Downstream 100 bases:

>100_bases
GCCGCGCCCCGCGTTTTCGGTGATGGAACTTCGCCCAGAGCAGCTGGCCGGCCAGTCCAGCCAGCCCTTGCAGCCGGTGT
ATCTGATCGCCGGCCCCGAG

Product: rare lipoprotein B

Products: NA

Alternate protein names: Rare Lipoprotein B Family; Lipoprotein; Rare Lipoprotein B Family Protein; Lipoprotein B Transmembrane Protein

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MIRFPTAFAASLVLVSSLTACGFHLRNSLALPPDTPAVKVQSAVQYSELAKLLRRGLKASGATLADEDAKTGFAQLQVLS
ERWGDLPIAIDSQGRAQEYSLRYAAIFTVTTANGSVLVPQQVIELSRDYVSPPVDATGTATEREILADELRKDMSASILR
RIDSVVRARLQRGEGLESTPTAPLPPAPTAPAQPTTTPESSVPASLPPAPTSGN

Sequences:

>Translated_214_residues
MIRFPTAFAASLVLVSSLTACGFHLRNSLALPPDTPAVKVQSAVQYSELAKLLRRGLKASGATLADEDAKTGFAQLQVLS
ERWGDLPIAIDSQGRAQEYSLRYAAIFTVTTANGSVLVPQQVIELSRDYVSPPVDATGTATEREILADELRKDMSASILR
RIDSVVRARLQRGEGLESTPTAPLPPAPTAPAQPTTTPESSVPASLPPAPTSGN
>Mature_214_residues
MIRFPTAFAASLVLVSSLTACGFHLRNSLALPPDTPAVKVQSAVQYSELAKLLRRGLKASGATLADEDAKTGFAQLQVLS
ERWGDLPIAIDSQGRAQEYSLRYAAIFTVTTANGSVLVPQQVIELSRDYVSPPVDATGTATEREILADELRKDMSASILR
RIDSVVRARLQRGEGLESTPTAPLPPAPTAPAQPTTTPESSVPASLPPAPTSGN

Specific function: Unknown

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22662; Mature: 22662

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFPTAFAASLVLVSSLTACGFHLRNSLALPPDTPAVKVQSAVQYSELAKLLRRGLKAS
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
GATLADEDAKTGFAQLQVLSERWGDLPIAIDSQGRAQEYSLRYAAIFTVTTANGSVLVPQ
CCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHEEEEEEEEEEECCCCEECHH
QVIELSRDYVSPPVDATGTATEREILADELRKDMSASILRRIDSVVRARLQRGEGLESTP
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TAPLPPAPTAPAQPTTTPESSVPASLPPAPTSGN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIRFPTAFAASLVLVSSLTACGFHLRNSLALPPDTPAVKVQSAVQYSELAKLLRRGLKAS
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
GATLADEDAKTGFAQLQVLSERWGDLPIAIDSQGRAQEYSLRYAAIFTVTTANGSVLVPQ
CCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHEEEEEEEEEEECCCCEECHH
QVIELSRDYVSPPVDATGTATEREILADELRKDMSASILRRIDSVVRARLQRGEGLESTP
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TAPLPPAPTAPAQPTTTPESSVPASLPPAPTSGN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA