| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is rng [H]
Identifier: 78048483
GI number: 78048483
Start: 3330051
End: 3331550
Strand: Reverse
Name: rng [H]
Synonym: XCV2927
Alternate gene names: 78048483
Gene position: 3331550-3330051 (Counterclockwise)
Preceding gene: 78048484
Following gene: 78048482
Centisome position: 64.33
GC content: 65.47
Gene sequence:
>1500_bases ATGTCGGAAGAGATTTTGGTCAACGTCACCCCGCGCGAGACCCGTGTGGCGGTGATCGAGAACGGCATGCTGCAGGAACT GCACATCGAGCGCGGCTGGCGCCGGGGCGTGGTGGGCAATATCTACAAGGGCAAGGTGCAGCGGGTGATGCCGGGCATGC AGGCTGCCTTCGTCGAAGTGGGGCTGGAGCGTGCCGCGTTCCTGCACGCCAACGACGTGGTCCGTCTGGCACCGGCACCA GCCAGCGTGGTCGATACCGAAGAAACCCCGATCCCGCCGCCGCCGCCGGCCTCGGTGCCGATCGTGGAGCTGCTGCGCGA CGGCCAGGAGATCGTGGTGCAGGTGGTCAAGGATCCGATCGGCACCAAGGGTGCGCGGTTGACCACGCAGATCAGCATCC CTTCGCGCTATCTGGTGCTGCTGCCGCAGTCCAAGGTGGTTGGGGTGTCGGCGCGCATCGAAGACGAGGCCGAGCGGCTG CGCCTGAAGACCATCGTCAGCGAGGTCTCGGCCCAGCATGGCGGCTTCGGCTACATCATCCGCACCAATGCCGAAGGCCA GCCGGCCGAGGCGCTGGCCGAAGACATCGCCTATCTGTCGCGGGTCTGGAACGTGGTCGAGCGCCGCGGCCGCGAAGCGC CGCCGTGCAGCATCATCTACGAAGACCTGAGCCTGCCGCTGCGCGCGGTGCGCGACCTGATCCGCCGCGACGTGGAAAAG GTCAAGGTCGACTCCAACGAGACCTTCGTGCAACTGCAGGCGTTCGTGGCCAAGTACATGCCGGTGCTGGCCGAGCGGCT GGAGCTGTACACCGGCGACCGCCCGATCTTCGACCTGTACGGGGTCGAAGACGAGATCGGACGCGCGCTGAACAAGCAGG TGCCGCTCAAATCCGGCGGCTATCTGGTGATCGACCAGACCGAGGCGATGACCACCATCGACGTCAATACCGGCTCGTTC GTCGGTCAGCGCAACCTCGAAGAAACCGTCTTCCGCACCAACCTGGAAGCCGCGCAGGCGGTGGCGCGGCAACTGCGCCT GCGCAACCTGGGCGGCATCATCATCATCGACTTCATCGACATGGACGATGCGGAGCACCGCCGGCAGGTGCTGCGCACCC TGGAAAAAGCGCTGGCGCGCGATCATGCCAAGACCACCGTGTATGAGTTCTCGCCGTTGGGCCTGGTGGAGATGACCCGC AAGCGCACCGTCGAAAGCCTGGAGCGCCAGCTCTCGGAAACCTGCGGCCAGTGCGGCGGGCGCGGCACCATCAAGACCGC CGAAACGGTGACCTACGAAATTTTCCGCGAGATCACCCGCGCCGTGCGCCAGTTCGATGCCGCGCGCCTGTTGGTGATCG CCTCGTCGAAAGTGGTCGCCCGCATCACCGAGGAAGAGTCCGCCGCCGTGGCCGAACTGGAAGAGTTCCTCGGCAAGAGC ATCCGCTTCCAGTCCGACGACCAGTACCTGCAGGAGCAGTTCGATGTGGTGCTGCTGTGA
Upstream 100 bases:
>100_bases CCGAACGCTTCATCCGCCATCTGTCCGGAAGCTATTCCGGCGTGATGGGATTGCCGCTGTACCACACCTCGCAGTTGCTC ACAGCCTTCGGAGCGCATTG
Downstream 100 bases:
>100_bases GTCCGGGAATGGGGAATCGGGATTGGGGATTTGTAAAAGCCGGCCCCGTCATGATGTGCGGCCAGCAGGAGCGTTGACGT TACCGTGCTTGGACACGCTG
Product: ribonuclease G
Products: NA
Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]
Number of amino acids: Translated: 499; Mature: 498
Protein sequence:
>499_residues MSEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVEVGLERAAFLHANDVVRLAPAP ASVVDTEETPIPPPPPASVPIVELLRDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEAERL RLKTIVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEK VKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSF VGQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTR KRTVESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITEEESAAVAELEEFLGKS IRFQSDDQYLQEQFDVVLL
Sequences:
>Translated_499_residues MSEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVEVGLERAAFLHANDVVRLAPAP ASVVDTEETPIPPPPPASVPIVELLRDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEAERL RLKTIVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEK VKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSF VGQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTR KRTVESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITEEESAAVAELEEFLGKS IRFQSDDQYLQEQFDVVLL >Mature_498_residues SEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVEVGLERAAFLHANDVVRLAPAPA SVVDTEETPIPPPPPASVPIVELLRDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEAERLR LKTIVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEKV KVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGGYLVIDQTEAMTTIDVNTGSFV GQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFIDMDDAEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRK RTVESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITEEESAAVAELEEFLGKSI RFQSDDQYLQEQFDVVLL
Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]
COG id: COG1530
COG function: function code J; Ribonucleases G and E
Gene ontology:
Cell location: Cytoplasm, cytoskeleton [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI87082235, Length=499, Percent_Identity=56.1122244488978, Blast_Score=526, Evalue=1e-150, Organism=Escherichia coli, GI1787325, Length=475, Percent_Identity=36, Blast_Score=284, Evalue=1e-77,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR019307 - InterPro: IPR022967 - InterPro: IPR004659 [H]
Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]
EC number: 3.1.4.- [C]
Molecular weight: Translated: 55744; Mature: 55612
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVEV CCCCEEEEECCCCCEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHH GLERAAFLHANDVVRLAPAPASVVDTEETPIPPPPPASVPIVELLRDGQEIVVQVVKDPI HHHHHHEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCC GTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEAERLRLKTIVSEVSAQHGGFGYII CCCCCEEEEEEECCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEE RTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEK EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEHHHHCCHHHHHHHHHHHHHHH VKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGG EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCCC YLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFID EEEEECCCCEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEC MDDAEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTVESLERQLSETCGQCGG CCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC RGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITEEESAAVAELEEFLGKS CCCCCHHHHHHHHHHHHHHHHHHHHCHHEEEEEECCHHEEEECCHHHHHHHHHHHHHCCC IRFQSDDQYLQEQFDVVLL CCCCCCHHHHHHHCCEECC >Mature Secondary Structure SEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVMPGMQAAFVEV CCCEEEEECCCCCEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHH GLERAAFLHANDVVRLAPAPASVVDTEETPIPPPPPASVPIVELLRDGQEIVVQVVKDPI HHHHHHEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCC GTKGARLTTQISIPSRYLVLLPQSKVVGVSARIEDEAERLRLKTIVSEVSAQHGGFGYII CCCCCEEEEEEECCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEE RTNAEGQPAEALAEDIAYLSRVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEK EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEHHHHCCHHHHHHHHHHHHHHH VKVDSNETFVQLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGG EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCCC YLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQLRLRNLGGIIIIDFID EEEEECCCCEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEC MDDAEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTRKRTVESLERQLSETCGQCGG CCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC RGTIKTAETVTYEIFREITRAVRQFDAARLLVIASSKVVARITEEESAAVAELEEFLGKS CCCCCHHHHHHHHHHHHHHHHHHHHCHHEEEEEECCHHEEEECCHHHHHHHHHHHHHCCC IRFQSDDQYLQEQFDVVLL CCCCCCHHHHHHHCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]