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The map label for this gene is araQ [H]

Identifier: 78048062

GI number: 78048062

Start: 2828438

End: 2829274

Strand: Reverse

Name: araQ [H]

Synonym: XCV2506

Alternate gene names: 78048062

Gene position: 2829274-2828438 (Counterclockwise)

Preceding gene: 78048063

Following gene: 78048061

Centisome position: 54.64

GC content: 62.6

Gene sequence:

>837_bases
ATGAGTCGTGATGTCGGCGAGTCGCGCTGGAATGCCGTGCTGATCAACGGCGGCCTGCTGGCGCTGGCGGTGATCAGCCT
GGCACCGCTGCTATGGATGCTGTCGGTGTCGTTCATGCCCACCGGCGAGGCCAGCCGGTTTCCGCCACCGATGCTGCCGT
CGGCGTTCACCACCGCCAACTACCACGAGCTGTTCGCGCGCACCGGCATGGCGCGCAACTTCGCCAACAGCTTGCTGGTG
TCCGGGCTGATCACGCTCGGCTCGCTACTGGTCAACACCATGGCCGGTTATGCGTTCGCCAAGCTGCAGTTCGTCGGCCG
CGAGCGCATCTTCAAGATCCTGATGGCCGCGCTGGTGATCCCGGCGCAGGTGGCGATGCTGCCGCTGTTCCTGCTGATGA
AGCAGTTGCACCTGGTCAACAACATCGGCGGGGTGGTGGTGCCGGCGCTGGCCACGGTGTTCGGCATCTTCCTGGTGCGT
CAGTACGCGCGCAGCATTCCGGATGAATTGATCGAGGCCGCGCGCATCGACGGTGCCAGCGAGATGCGCATCTTCTTCCA
GATCGTGTTGCCGATGCTCAAGCCGGTGCTGGTCACCTTGACCATCTTCACCTTCATGGGTTCGTGGAACGACTTCATGT
GGCCGTTGATCGTGCTGACCGACCAGGAGCAGTACACCTTGCCGGTGGCGCTGGCGGCGCTGTCGCGCGAGCACATCATG
GATGTGGAATTGATGATGGCTGGCGCAGTGGTGACGGTGATTCCGGTGCTGCTATTGTTCCTGGCGCTGCAGCGTTACTA
CATCCAAGGTCTTCTGCTGGGGAGTGTGAAGGGGTGA

Upstream 100 bases:

>100_bases
GGAACCTCGGCCGCGCGTCGGCGGTGGCGTTCCTGTTGTTCCTCATCATTCTGGCGGTGACCACCGTGATGCTGCGCTTT
GGCCGCAAGAAGGACCTGAT

Downstream 100 bases:

>100_bases
AACCAGTGTTCCTGCGACTGTGTGCCATGGCCGCTTTCGTCACGTCTGCGGGCGCGGCGCAGGCGCAGGAGCGCGTGCTC
GACGGCTTCAACGACATCGG

Product: ABC transporter sugar permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSRDVGESRWNAVLINGGLLALAVISLAPLLWMLSVSFMPTGEASRFPPPMLPSAFTTANYHELFARTGMARNFANSLLV
SGLITLGSLLVNTMAGYAFAKLQFVGRERIFKILMAALVIPAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVR
QYARSIPDELIEAARIDGASEMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALAALSREHIM
DVELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG

Sequences:

>Translated_278_residues
MSRDVGESRWNAVLINGGLLALAVISLAPLLWMLSVSFMPTGEASRFPPPMLPSAFTTANYHELFARTGMARNFANSLLV
SGLITLGSLLVNTMAGYAFAKLQFVGRERIFKILMAALVIPAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVR
QYARSIPDELIEAARIDGASEMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALAALSREHIM
DVELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG
>Mature_277_residues
SRDVGESRWNAVLINGGLLALAVISLAPLLWMLSVSFMPTGEASRFPPPMLPSAFTTANYHELFARTGMARNFANSLLVS
GLITLGSLLVNTMAGYAFAKLQFVGRERIFKILMAALVIPAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVRQ
YARSIPDELIEAARIDGASEMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALAALSREHIMD
VELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=234, Percent_Identity=30.7692307692308, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1787571, Length=265, Percent_Identity=29.4339622641509, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1790464, Length=210, Percent_Identity=28.0952380952381, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30573; Mature: 30442

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRDVGESRWNAVLINGGLLALAVISLAPLLWMLSVSFMPTGEASRFPPPMLPSAFTTAN
CCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCH
YHELFARTGMARNFANSLLVSGLITLGSLLVNTMAGYAFAKLQFVGRERIFKILMAALVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVRQYARSIPDELIEAARIDGAS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHH
EMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALAALSREHIM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
DVELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SRDVGESRWNAVLINGGLLALAVISLAPLLWMLSVSFMPTGEASRFPPPMLPSAFTTAN
CCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCH
YHELFARTGMARNFANSLLVSGLITLGSLLVNTMAGYAFAKLQFVGRERIFKILMAALVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVRQYARSIPDELIEAARIDGAS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHH
EMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALAALSREHIM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
DVELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]