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The map label for this gene is ygfZ [C]

Identifier: 78047795

GI number: 78047795

Start: 2572471

End: 2573343

Strand: Reverse

Name: ygfZ [C]

Synonym: XCV2239

Alternate gene names: 78047795

Gene position: 2573343-2572471 (Counterclockwise)

Preceding gene: 78047806

Following gene: 78047793

Centisome position: 49.69

GC content: 65.41

Gene sequence:

>873_bases
GTGGCTGACAACCTGAATCTTATTCCGCAGGGTTTTGGCTCCCTGCACGACATGCAATACGTCCGATTGGCCGGTACGGA
TGCAGTGGCGTTTGCGCATGCCCAATTTGCCAATGACGTACAGGCGCTGGCGGTTGGGCAGTGGCAGTGGAACGCGTGGC
TGACGGCGAAGGGGCGCGTGATTGCCATCTTCGCACTCCTGCGTGAGGACGACGCACACCTGCTGATGCTGTTGCCGGAC
GGCAACTCAGCCGAGATCGCCGCGCAACTCAGCCGTTTCGTGTTCCGCCGCAAGCTGAAAATCAGCGCTGCCGCGCTGCT
CGCCTACGGCGGCTTCGTAGCGCCGGAACACGCGCATGCCGCGCAAGCCGATCTCGGAACCCAGCGTATCGAGCTGGATC
TGGGTAGCGCAGCGCTGCCGCGCACGCTATTGCTCTACAGCCCGGATGCATTGGCGATGCCTATCGAACTGCCGAGCGCA
CAGGCGCAGTGGCGGACGACCGATCTGCAACTGGGGCTCGCCCGCCTGGTCGAGAGCCAGCGCGAACAGTGGACGCCGCA
GCAGTTGGCACTGGACCGCCTGCAGGCGTACAGCGTCAAGAAAGGCTGCTACCCGGGTCAGGAAATCGTGGCGCGGACGC
ACTTCCTGGGCAAGGCCAAGCGCGTCTTGCAGCTGCTCGAAACGGATGCGGCCGTGGATGCAGGCGATGCCGTCGCATTG
GACGGTAGCGCGATCGGCACGGTGGTGAGCGTGGCCGGCAACCTCGCGCTGGCGGTATTGCCGTTGGAGCTGACGCTGGA
CGCCGGTGCCGCGTTGCAGGCAGGCACGCAGGTCGCCCGCCCACGCGCACTCACGACGGGGCTGGAGCGTTAG

Upstream 100 bases:

>100_bases
CCTGAGAAGAAGGCTGCGTCTCGGAATCCTGCGCTGGGGTGGGGGTTGGATGGCCTATCATAGTGCTCTCACAACTTGGC
GATTTTAGTCCTCCCCTTCC

Downstream 100 bases:

>100_bases
CGGCAAAAAAAGCAGCGAGCCATGCCAGACGGGAATGGACATCGCGCAGCACGCAGTGGCCCAACGACACCCGCCAATTC
CGAGCGCCGGCCGTGCCCGT

Product: putative aminomethyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MADNLNLIPQGFGSLHDMQYVRLAGTDAVAFAHAQFANDVQALAVGQWQWNAWLTAKGRVIAIFALLREDDAHLLMLLPD
GNSAEIAAQLSRFVFRRKLKISAAALLAYGGFVAPEHAHAAQADLGTQRIELDLGSAALPRTLLLYSPDALAMPIELPSA
QAQWRTTDLQLGLARLVESQREQWTPQQLALDRLQAYSVKKGCYPGQEIVARTHFLGKAKRVLQLLETDAAVDAGDAVAL
DGSAIGTVVSVAGNLALAVLPLELTLDAGAALQAGTQVARPRALTTGLER

Sequences:

>Translated_290_residues
MADNLNLIPQGFGSLHDMQYVRLAGTDAVAFAHAQFANDVQALAVGQWQWNAWLTAKGRVIAIFALLREDDAHLLMLLPD
GNSAEIAAQLSRFVFRRKLKISAAALLAYGGFVAPEHAHAAQADLGTQRIELDLGSAALPRTLLLYSPDALAMPIELPSA
QAQWRTTDLQLGLARLVESQREQWTPQQLALDRLQAYSVKKGCYPGQEIVARTHFLGKAKRVLQLLETDAAVDAGDAVAL
DGSAIGTVVSVAGNLALAVLPLELTLDAGAALQAGTQVARPRALTTGLER
>Mature_289_residues
ADNLNLIPQGFGSLHDMQYVRLAGTDAVAFAHAQFANDVQALAVGQWQWNAWLTAKGRVIAIFALLREDDAHLLMLLPDG
NSAEIAAQLSRFVFRRKLKISAAALLAYGGFVAPEHAHAAQADLGTQRIELDLGSAALPRTLLLYSPDALAMPIELPSAQ
AQWRTTDLQLGLARLVESQREQWTPQQLALDRLQAYSVKKGCYPGQEIVARTHFLGKAKRVLQLLETDAAVDAGDAVALD
GSAIGTVVSVAGNLALAVLPLELTLDAGAALQAGTQVARPRALTTGLER

Specific function: Folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication [H]

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tRNA-modifying ygfZ family [H]

Homologues:

None

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 31042; Mature: 30911

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADNLNLIPQGFGSLHDMQYVRLAGTDAVAFAHAQFANDVQALAVGQWQWNAWLTAKGRV
CCCCCCCCCCCCCCHHHCEEEEEECCCHHHHHHHHHHCCHHEEEECCEEEEEEEEECCCE
IAIFALLREDDAHLLMLLPDGNSAEIAAQLSRFVFRRKLKISAAALLAYGGFVAPEHAHA
EEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
AQADLGTQRIELDLGSAALPRTLLLYSPDALAMPIELPSAQAQWRTTDLQLGLARLVESQ
HHHCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEECCCCCCCEECHHHHHHHHHHHHHH
REQWTPQQLALDRLQAYSVKKGCYPGQEIVARTHFLGKAKRVLQLLETDAAVDAGDAVAL
HHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
DGSAIGTVVSVAGNLALAVLPLELTLDAGAALQAGTQVARPRALTTGLER
CCHHHHHHHHHHCCEEEEEEEEEEEECCCCHHHCCCHHCCCHHHHCCCCC
>Mature Secondary Structure 
ADNLNLIPQGFGSLHDMQYVRLAGTDAVAFAHAQFANDVQALAVGQWQWNAWLTAKGRV
CCCCCCCCCCCCCHHHCEEEEEECCCHHHHHHHHHHCCHHEEEECCEEEEEEEEECCCE
IAIFALLREDDAHLLMLLPDGNSAEIAAQLSRFVFRRKLKISAAALLAYGGFVAPEHAHA
EEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
AQADLGTQRIELDLGSAALPRTLLLYSPDALAMPIELPSAQAQWRTTDLQLGLARLVESQ
HHHCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEECCCCCCCEECHHHHHHHHHHHHHH
REQWTPQQLALDRLQAYSVKKGCYPGQEIVARTHFLGKAKRVLQLLETDAAVDAGDAVAL
HHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
DGSAIGTVVSVAGNLALAVLPLELTLDAGAALQAGTQVARPRALTTGLER
CCHHHHHHHHHHCCEEEEEEEEEEEECCCCHHHCCCHHCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA