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The map label for this gene is nodD [H]

Identifier: 78047700

GI number: 78047700

Start: 2460378

End: 2461349

Strand: Reverse

Name: nodD [H]

Synonym: XCV2144

Alternate gene names: 78047700

Gene position: 2461349-2460378 (Counterclockwise)

Preceding gene: 78047701

Following gene: 78047699

Centisome position: 47.53

GC content: 66.98

Gene sequence:

>972_bases
ATGAATATCCGACCAAGCGACTTACCTCTTCTGGTGTCCCTCGACGCATTGCTCGAGCTGAAGAACGTCACCCACGCAGC
GCAGCGATTGCACATGAGCCAACCGGCACTGTCTTCGCAACTGGCACGGTTGCGCGTGCTGTTCAAGGATCCCTTGCTGA
TGCCCTCGGACACCGGGCGCGGCATGGTGGCCACGCCGCGTGCGGATCAACTGGCATCGCCACTGCGCGAAGCCATCGGC
AAACTGAGTCTGCTCGGCAAGGACAGTGCGTTCGATCCGTCGACGTCATCGGCGAGTTTCCGCATTGCCGCCGCCGCCGA
TGCGATCGGCACGCTGGGTGCGGGGTTGGCGGGATCGATCCAGGCCCAGGGCAATCCGAAGATGCGCCTGGAGTTCGTGC
AGATCGGTGCCGACACCAGCCTGGACGCCTTCGAAAGCGGCGAGCTGGATCTGCTGATCGATCATGCGCAGGCAGTTCCT
TCCGCGCTGCGTCTGCGCCGCCTGCGCGACGAACGTTACGTGCTGGTGCAGCGCCGTGGCCATCCGCGCGGTACCGCAGC
GCTGAGCGCGGCAAGTTACAGCCGGCTGTCGCATGTGCAGGTGGCACACGCACAGGCCTGCAACCTCGCCATCGATGCGC
AACTGCAGCAGTTGGGCCACACCCGCCAGATCGCGGTGACCGTGTCGCAGTGCGCGACCGCGCGCGACATCGTGCTCGGC
ACCGACATGGTCGCCACGGTGCCGGCCACGCTGGCAGCGGAGAGCGGGCATGCACCGCTGGACTGTTTCGACCTGCCCTT
CCCGCTGCCGGACATGGCGCTGGCAATGGCCTGGCATCGCCGCAACGATGGCCATGCCGCGCATCGCTGGTTGCGCGAAC
GCGTGCTGGAACTGCTGGTTCCAGCAGCGCCCGCCGCGCCGGCAGCGCGACGCGCCGCCGGCCGTGGCGACCTCGTGCTG
TCCGTCTCGTGA

Upstream 100 bases:

>100_bases
GTCGCTGCGGATCGACACCGGAACGTAGCGCGGGCTGCCTAGCGTAGCGGATGCCCAGGCGCAGCAGACCGCCTGCATTC
CACTACGAGCGATCCACGAC

Downstream 100 bases:

>100_bases
GCGGCGCCATGCAGATCGACAGCGAACAGCTACTGCAGCCGGTGGACGCACAGGCGCCGTCCGGTCCGAACCTGGAATAC
ACCCCGGAGTTCCAGAGCCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MNIRPSDLPLLVSLDALLELKNVTHAAQRLHMSQPALSSQLARLRVLFKDPLLMPSDTGRGMVATPRADQLASPLREAIG
KLSLLGKDSAFDPSTSSASFRIAAAADAIGTLGAGLAGSIQAQGNPKMRLEFVQIGADTSLDAFESGELDLLIDHAQAVP
SALRLRRLRDERYVLVQRRGHPRGTAALSAASYSRLSHVQVAHAQACNLAIDAQLQQLGHTRQIAVTVSQCATARDIVLG
TDMVATVPATLAAESGHAPLDCFDLPFPLPDMALAMAWHRRNDGHAAHRWLRERVLELLVPAAPAAPAARRAAGRGDLVL
SVS

Sequences:

>Translated_323_residues
MNIRPSDLPLLVSLDALLELKNVTHAAQRLHMSQPALSSQLARLRVLFKDPLLMPSDTGRGMVATPRADQLASPLREAIG
KLSLLGKDSAFDPSTSSASFRIAAAADAIGTLGAGLAGSIQAQGNPKMRLEFVQIGADTSLDAFESGELDLLIDHAQAVP
SALRLRRLRDERYVLVQRRGHPRGTAALSAASYSRLSHVQVAHAQACNLAIDAQLQQLGHTRQIAVTVSQCATARDIVLG
TDMVATVPATLAAESGHAPLDCFDLPFPLPDMALAMAWHRRNDGHAAHRWLRERVLELLVPAAPAAPAARRAAGRGDLVL
SVS
>Mature_323_residues
MNIRPSDLPLLVSLDALLELKNVTHAAQRLHMSQPALSSQLARLRVLFKDPLLMPSDTGRGMVATPRADQLASPLREAIG
KLSLLGKDSAFDPSTSSASFRIAAAADAIGTLGAGLAGSIQAQGNPKMRLEFVQIGADTSLDAFESGELDLLIDHAQAVP
SALRLRRLRDERYVLVQRRGHPRGTAALSAASYSRLSHVQVAHAQACNLAIDAQLQQLGHTRQIAVTVSQCATARDIVLG
TDMVATVPATLAAESGHAPLDCFDLPFPLPDMALAMAWHRRNDGHAAHRWLRERVLELLVPAAPAAPAARRAAGRGDLVL
SVS

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=305, Percent_Identity=26.5573770491803, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790147, Length=300, Percent_Identity=24.3333333333333, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081766, Length=272, Percent_Identity=26.8382352941176, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34421; Mature: 34421

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRPSDLPLLVSLDALLELKNVTHAAQRLHMSQPALSSQLARLRVLFKDPLLMPSDTGR
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
GMVATPRADQLASPLREAIGKLSLLGKDSAFDPSTSSASFRIAAAADAIGTLGAGLAGSI
CEEECCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCE
QAQGNPKMRLEFVQIGADTSLDAFESGELDLLIDHAQAVPSALRLRRLRDERYVLVQRRG
ECCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEECC
HPRGTAALSAASYSRLSHVQVAHAQACNLAIDAQLQQLGHTRQIAVTVSQCATARDIVLG
CCCCHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHCCCCEEEEEEHHHHCCHHHEEEC
TDMVATVPATLAAESGHAPLDCFDLPFPLPDMALAMAWHRRNDGHAAHRWLRERVLELLV
CCHHHHCCHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
PAAPAAPAARRAAGRGDLVLSVS
CCCCCCCHHHHCCCCCCEEEEEC
>Mature Secondary Structure
MNIRPSDLPLLVSLDALLELKNVTHAAQRLHMSQPALSSQLARLRVLFKDPLLMPSDTGR
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
GMVATPRADQLASPLREAIGKLSLLGKDSAFDPSTSSASFRIAAAADAIGTLGAGLAGSI
CEEECCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCE
QAQGNPKMRLEFVQIGADTSLDAFESGELDLLIDHAQAVPSALRLRRLRDERYVLVQRRG
ECCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEECC
HPRGTAALSAASYSRLSHVQVAHAQACNLAIDAQLQQLGHTRQIAVTVSQCATARDIVLG
CCCCHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHCCCCEEEEEEHHHHCCHHHEEEC
TDMVATVPATLAAESGHAPLDCFDLPFPLPDMALAMAWHRRNDGHAAHRWLRERVLELLV
CCHHHHCCHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
PAAPAAPAARRAAGRGDLVLSVS
CCCCCCCHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3960737 [H]