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The map label for this gene is fliR [H]

Identifier: 78047542

GI number: 78047542

Start: 2267608

End: 2268399

Strand: Reverse

Name: fliR [H]

Synonym: XCV1986

Alternate gene names: 78047542

Gene position: 2268399-2267608 (Counterclockwise)

Preceding gene: 78047543

Following gene: 78047541

Centisome position: 43.8

GC content: 66.92

Gene sequence:

>792_bases
ATGGATTCTGCAACCCAGATGGTGATCGATGGCCAGCGCGCGTTCGCGATGGTCGGGGCGATCATGTGGACCATGCTGCG
CACCGGTGCGTTGCTCACCGCCATGCCGTTGATCGGTACGCGGGCGGTGCCCGGACGGGTGCGGGTGATGCTGGCCGGGA
CGCTGGCGATGGTGCTGGCGCCGATCCTGCCGCCGGTGCCGGAGTGGGACGGCTTTACCGCCCAGGCAGTGCTGAGCATT
GCGCGCGAGCTGGCGGTCGGGGCCAGCATGGGCTTCATGCTGAAGCTGATTTTCGAAGCCGGCGCATTGGCCGGCGAACT
GGTGTCGCAGTCCACCGGCCTGTCGTTCGCGCAGATGTCCGACCCGATGCGCGGCGTGACGTCGGGGGTGATCGCGCAGT
GGTTCTATCTCGGCTTCGGGCTGCTGTTCTTCGCGGCCAACGGGCATCTGGCGGTGATCGCATTGCTGGTGGACAGCTAC
AAGGCGTTGCCGATCGGGACCGCGTTGCCCGATGCCGGCGCATTCGCCGAAGTGGCGCCCACCCTGTTCCTGCAGATCCT
GCGCGGCGGGTTGACCCTGGCCTTGCCGATGATGGTGGCGATGCTGGCGGTCAACCTGGCCTTCGGCGCGCTGGCCAAGG
CGGCGCCGGCATTGAATCCCATGCAACTGGGCCTGCCGCTGACGGTGTTGCTGGGGCTGTTCCTACTGTCGAGTTTCGCC
AGCGAGTTCGCCCCGCCGGTGCAACGCATGTTCGATACCGCCTTCGATGCCGCCAGAGAGCTGACGGCCTGA

Upstream 100 bases:

>100_bases
CTGTTTGCCACCGGCAGCATGCTGCTGGGGCATCTGGTGGAGTTCACCATCGCGCTATTCCAGCGCATTCCACACCTGAT
CGGCTAGCGGGCCAGACCGG

Downstream 100 bases:

>100_bases
CCCACACTAGAACAATGGCCGACCACTGCAAGCACGGCAGGCCGCCAACTTGCCGGCGCCGCCACCACTTCGACGGGCCG
CCCCGCCTGCACCGTTTCAA

Product: flagellar biosynthesis pathway component FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MDSATQMVIDGQRAFAMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLSI
ARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYLGFGLLFFAANGHLAVIALLVDSY
KALPIGTALPDAGAFAEVAPTLFLQILRGGLTLALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFA
SEFAPPVQRMFDTAFDAARELTA

Sequences:

>Translated_263_residues
MDSATQMVIDGQRAFAMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLSI
ARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYLGFGLLFFAANGHLAVIALLVDSY
KALPIGTALPDAGAFAEVAPTLFLQILRGGLTLALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFA
SEFAPPVQRMFDTAFDAARELTA
>Mature_263_residues
MDSATQMVIDGQRAFAMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLSI
ARELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYLGFGLLFFAANGHLAVIALLVDSY
KALPIGTALPDAGAFAEVAPTLFLQILRGGLTLALPMMVAMLAVNLAFGALAKAAPALNPMQLGLPLTVLLGLFLLSSFA
SEFAPPVQRMFDTAFDAARELTA

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=250, Percent_Identity=33.2, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27490; Mature: 27490

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9324257; 11677609 [H]