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The map label for this gene is ygaF [H]

Identifier: 78047344

GI number: 78047344

Start: 2010711

End: 2011193

Strand: Reverse

Name: ygaF [H]

Synonym: XCV1788

Alternate gene names: 78047344

Gene position: 2011193-2010711 (Counterclockwise)

Preceding gene: 78047345

Following gene: 78047343

Centisome position: 38.84

GC content: 62.73

Gene sequence:

>483_bases
ATGACCGACGCTGTGCTGGAATTACCCGCCGCAACCTTCGACCTGCCGCTGGCGCTGTCCGGCGGCACCCACACCACCCT
GCGCGACCATGCCGGCACATGGCTGGTGCTGTACTTCTACCCGAAGGACAGCACGCCCGGCTGCACCACCGAAGGCCTGG
ACTTCAATGCCTTGCTGCCGCAGTTCAAAAAAGCGGGCGCGATGGTGTTGGGCGTTTCGCGCGATTCGGTGAAGTCGCAC
GACAACTTCTGCGCCAAGCAAGGCTTCGCCTTCCCGTTGATCAGCGACAGCGATGAAGCGCTGTGCCGCGCCTTCGACGT
GATCAAGGAAAAGAACATGTACGGCAAACAGGTGCTCGGCATCGAGCGCAGCACCTTCTTGCTGTCGCCCGAGGGGCATG
TCGTGCAGGAATGGCGCAAGGTCAAGGTCGCCGGCCATGCCGAGGCCGTGCTGGCCGCAGTAAAGGCGCACGCCAAACAG
TGA

Upstream 100 bases:

>100_bases
CGACGCACTTGCCAAACGCTTCCATGTGGCTGCTTATGATGGGATGGACGTCGGCCCGGCCTGACCGCGCCGTCGCCCCT
CCACTTTGGGCTGAGCAACG

Downstream 100 bases:

>100_bases
CACCCCTCGCTTCCCGCGTCCTCCATCACCCTGCAGCTGCAGGCGTGATGGCTCGCCCCTGCTCCATCACTTGGAAGACC
CAATGACCCGAGGCAAGCGC

Product: AhpC/TSA family peroxiredoxin

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MTDAVLELPAATFDLPLALSGGTHTTLRDHAGTWLVLYFYPKDSTPGCTTEGLDFNALLPQFKKAGAMVLGVSRDSVKSH
DNFCAKQGFAFPLISDSDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGHVVQEWRKVKVAGHAEAVLAAVKAHAKQ

Sequences:

>Translated_160_residues
MTDAVLELPAATFDLPLALSGGTHTTLRDHAGTWLVLYFYPKDSTPGCTTEGLDFNALLPQFKKAGAMVLGVSRDSVKSH
DNFCAKQGFAFPLISDSDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGHVVQEWRKVKVAGHAEAVLAAVKAHAKQ
>Mature_159_residues
TDAVLELPAATFDLPLALSGGTHTTLRDHAGTWLVLYFYPKDSTPGCTTEGLDFNALLPQFKKAGAMVLGVSRDSVKSHD
NFCAKQGFAFPLISDSDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGHVVQEWRKVKVAGHAEAVLAAVKAHAKQ

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Escherichia coli, GI1788825, Length=149, Percent_Identity=36.241610738255, Blast_Score=98, Evalue=3e-22,
Organism=Drosophila melanogaster, GI17738015, Length=161, Percent_Identity=32.2981366459627, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 17391; Mature: 17260

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDAVLELPAATFDLPLALSGGTHTTLRDHAGTWLVLYFYPKDSTPGCTTEGLDFNALLP
CCCCCEECCCCCCCCEEEECCCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHH
QFKKAGAMVLGVSRDSVKSHDNFCAKQGFAFPLISDSDEALCRAFDVIKEKNMYGKQVLG
HHHHCCEEEEECCCHHHHHCCCHHHHCCCCCEEECCCHHHHHHHHHHHHHCCCCCCEEEC
IERSTFLLSPEGHVVQEWRKVKVAGHAEAVLAAVKAHAKQ
CCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDAVLELPAATFDLPLALSGGTHTTLRDHAGTWLVLYFYPKDSTPGCTTEGLDFNALLP
CCCCEECCCCCCCCEEEECCCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHH
QFKKAGAMVLGVSRDSVKSHDNFCAKQGFAFPLISDSDEALCRAFDVIKEKNMYGKQVLG
HHHHCCEEEEECCCHHHHHCCCHHHHCCCCCEEECCCHHHHHHHHHHHHHCCCCCCEEEC
IERSTFLLSPEGHVVQEWRKVKVAGHAEAVLAAVKAHAKQ
CCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]