| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is ydjE [C]
Identifier: 78047294
GI number: 78047294
Start: 1959230
End: 1959727
Strand: Reverse
Name: ydjE [C]
Synonym: XCV1738
Alternate gene names: 78047294
Gene position: 1959727-1959230 (Counterclockwise)
Preceding gene: 78047295
Following gene: 78047291
Centisome position: 37.84
GC content: 63.45
Gene sequence:
>498_bases CTGATCTCGGCGCAGGGCACCGGGGCCGGGGTGACCAAAAGCCTGGCGTACTCGTTTGCGATCTCGTTGGCCTACCCGCT GGCGCCATTGCTGTTGCTGCGTTTTGCACAGCGCTGGGAAAACAAATGGCAGATCACCGCATCGGCGCTGGGCGCTGTTC TGTTCGGTGGGCTGTTCGAGTTGCAGCATCAGGCCGTCGGCATGGTGCTGTGCGGGGCGATGGTCGCGTTCTGCAACGCC TGGATGAGCTTTGCCTATCACGGCTATCAGGCGGAGCTGTTCCCGACCGGCTTGCGTGCACGTGCAGTGGGCTTCTGTTA TTCCTTCAGTCGCCTCTCCACGGCGGTGAGCAGCGTGCTGATCGGCTGGTTGCTGACGCAGGTTGGCAGCCACGGGGTGC TGGCCTTCATCGCGCTCAGCATGTCGATCGTGGCGAGCGTGATTGCCGCGTTCGGGCCGCGCACGCGCAATCGGGCGCTG GAAGAGATTGCGGGATAA
Upstream 100 bases:
>100_bases GCTGTGGCGTGCGCCGTATCGCGGGCGCATCGGGATGTTGGTGGTCTTCCATGTGTTTCAGGCGATCGGCTTCTTCGGTT TCGGCAACTGGTTGCCTGCG
Downstream 100 bases:
>100_bases AACGGCTGGCCCAGTGACCAGACGCACGCCTGGCGTGCGCAGCCGGTGCGCCGCGTGACCGGCCCATCCGGTGCCTGCGT GTCTTCGAGCGAGCCCGATG
Product: putative major facilitator superfamily protein (fragment)
Products: NA
Alternate protein names: Facilitator Superfamily Protein; MFS Transporter; Facilitator Family Transporter; General Substrate Transporter; Facilitator Superfamily Permease; Facilitator Superfamily Transporter; Transporter MFS General Substrate Transporter Domain; Sugar Transporter; Facilitator Superfamily Metabolite(Sugar)/H(+) Symporter; MFS Family Transporter
Number of amino acids: Translated: 165; Mature: 165
Protein sequence:
>165_residues MISAQGTGAGVTKSLAYSFAISLAYPLAPLLLLRFAQRWENKWQITASALGAVLFGGLFELQHQAVGMVLCGAMVAFCNA WMSFAYHGYQAELFPTGLRARAVGFCYSFSRLSTAVSSVLIGWLLTQVGSHGVLAFIALSMSIVASVIAAFGPRTRNRAL EEIAG
Sequences:
>Translated_165_residues MISAQGTGAGVTKSLAYSFAISLAYPLAPLLLLRFAQRWENKWQITASALGAVLFGGLFELQHQAVGMVLCGAMVAFCNA WMSFAYHGYQAELFPTGLRARAVGFCYSFSRLSTAVSSVLIGWLLTQVGSHGVLAFIALSMSIVASVIAAFGPRTRNRAL EEIAG >Mature_165_residues MISAQGTGAGVTKSLAYSFAISLAYPLAPLLLLRFAQRWENKWQITASALGAVLFGGLFELQHQAVGMVLCGAMVAFCNA WMSFAYHGYQAELFPTGLRARAVGFCYSFSRLSTAVSSVLIGWLLTQVGSHGVLAFIALSMSIVASVIAAFGPRTRNRAL EEIAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17600; Mature: 17600
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISAQGTGAGVTKSLAYSFAISLAYPLAPLLLLRFAQRWENKWQITASALGAVLFGGLFE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LQHQAVGMVLCGAMVAFCNAWMSFAYHGYQAELFPTGLRARAVGFCYSFSRLSTAVSSVL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHH IGWLLTQVGSHGVLAFIALSMSIVASVIAAFGPRTRNRALEEIAG HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC >Mature Secondary Structure MISAQGTGAGVTKSLAYSFAISLAYPLAPLLLLRFAQRWENKWQITASALGAVLFGGLFE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LQHQAVGMVLCGAMVAFCNAWMSFAYHGYQAELFPTGLRARAVGFCYSFSRLSTAVSSVL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHH IGWLLTQVGSHGVLAFIALSMSIVASVIAAFGPRTRNRALEEIAG HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA