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The map label for this gene is slyD [H]

Identifier: 78046969

GI number: 78046969

Start: 1593363

End: 1593683

Strand: Reverse

Name: slyD [H]

Synonym: XCV1413

Alternate gene names: 78046969

Gene position: 1593683-1593363 (Counterclockwise)

Preceding gene: 78046970

Following gene: 78046968

Centisome position: 30.78

GC content: 66.67

Gene sequence:

>321_bases
ATGGAAATCAGCCAGGGTCGCGTTGCGACCATCCACTACACCCTTTCCGACGACAACGGCCAAGTGCTGGACCGCTCCAC
GCCCGACACTCCGCTGAGTTATCTGCATGGCGCCGGCAACATCGTGCCCGGCCTGGAGCAGGCACTGGAAGGCAAGCGGC
TGGGCGATACGCTCACCGCCGACGTCGTGCCCGAACAGGGCTATGGCCCGCGCCACGAGCAGCTCAGGTGCCGCGCGATG
CGTTTCCGACCGATGTCGACGTGGTACCCGGCGTGCAGTTCGAGGCGCGCACGCAGCAAGGCCCGGTCCTGGTCACGGTG
A

Upstream 100 bases:

>100_bases
CATGATCCGGTGCGATTGCCTACGGTGTGCGTGCGGCACCTCTTCGCATCGTGAATCAGCCGATGCATTCCCCTCGATCA
CCCATTCATGGAGGTTTCCA

Downstream 100 bases:

>100_bases
CCGCGGTTGGCCCCGATCAGGTCACCGTGGACGGCAACCACCCGCTCGCCGGGCAAACCCTGCACTTCGCGGTCGAGGTG
GTGGCAGTGCGCGAGGCCAC

Product: peptidylprolyl isomerase (N-terminal fragment)

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 106; Mature: 106

Protein sequence:

>106_residues
MEISQGRVATIHYTLSDDNGQVLDRSTPDTPLSYLHGAGNIVPGLEQALEGKRLGDTLTADVVPEQGYGPRHEQLRCRAM
RFRPMSTWYPACSSRRARSKARSWSR

Sequences:

>Translated_106_residues
MEISQGRVATIHYTLSDDNGQVLDRSTPDTPLSYLHGAGNIVPGLEQALEGKRLGDTLTADVVPEQGYGPRHEQLRCRAM
RFRPMSTWYPACSSRRARSKARSWSR
>Mature_106_residues
MEISQGRVATIHYTLSDDNGQVLDRSTPDTPLSYLHGAGNIVPGLEQALEGKRLGDTLTADVVPEQGYGPRHEQLRCRAM
RFRPMSTWYPACSSRRARSKARSWSR

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 11888; Mature: 11888

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEISQGRVATIHYTLSDDNGQVLDRSTPDTPLSYLHGAGNIVPGLEQALEGKRLGDTLTA
CCCCCCCEEEEEEEEECCCCEEEECCCCCCHHHHHCCCCCCCCCHHHHHCCCCCCCEEEE
DVVPEQGYGPRHEQLRCRAMRFRPMSTWYPACSSRRARSKARSWSR
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCC
>Mature Secondary Structure
MEISQGRVATIHYTLSDDNGQVLDRSTPDTPLSYLHGAGNIVPGLEQALEGKRLGDTLTA
CCCCCCCEEEEEEEEECCCCEEEECCCCCCHHHHHCCCCCCCCCHHHHHCCCCCCCEEEE
DVVPEQGYGPRHEQLRCRAMRFRPMSTWYPACSSRRARSKARSWSR
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]