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The map label for this gene is lhr [C]

Identifier: 78046949

GI number: 78046949

Start: 1571484

End: 1573985

Strand: Reverse

Name: lhr [C]

Synonym: XCV1393

Alternate gene names: 78046949

Gene position: 1573985-1571484 (Counterclockwise)

Preceding gene: 78046950

Following gene: 78046948

Centisome position: 30.39

GC content: 67.67

Gene sequence:

>2502_bases
GTGAGCGTCACGCAGCACACGTATGGCACGCCACTGCAACAGTGGCGTGCCTGGTTCGCGCAGCGCGGCTGGGCGCCACT
GCCGTTTCAACGCGATGTGTGGAAGCGCTATCTCGACGGCGAATCGGGCCTGCTGCATACGCCCACCGGCAGCGGCAAGA
CGCTGGCGGCATTTGGCGGGCCGTTACTGGAGGCATTGGCCGCGCGTGGGCGCAAATCCCCGCGCAAACCGGGCAAACCC
ACCTCCCCTGCGCGCCGCCAGCCGCAACGCAATCTGCAAGTGTTGTGGATCACGCCACTGCGTGCACTGGCCGCCGACAC
CGCACGCGCGCTGCGCGAGCCGGTGGACGCATTGGGGCTGGATTGGCAGGTGGGCCTGCGTACCGGCGATGCCAGCGCGC
GCGACAAGCGGCTGGCACGCAGCGGCAAGCTCGACGTGCTGGTCACCACGCCCGAATCGCTGGCCTTGCTATTGTCGTAT
CCGGATACCGCGCCGCAGCTGTCGGCATTGCGCTGTGTGATCGTCGACGAATGGCACGAGCTGCTGGGCAACAAGCGCGG
CGTGTTGCTGCAATTGTGTCTTGCGCGCTTGCGCGGATGGACGCCGCACCTGCGCATCTGGGGGCTGTCGGCGACGCTGG
GGAACTTATCGCAGGCACGCGATGTGCTGTTGCCGCATCGCCCCGAGGCGGCGCTGGTCTCCGGCGTCAAACCGCGCACG
ATGACGCTTGAAACCTTGCTGCCGGACAGTGGCGAGCGCTTTCCCTGGGCAGGCCACCTTGGTCTGGCGCAACTGGCGCG
CGTGCTGCAAAAGATCATGCAACAGCGCACCAGCCTGGTGTTTACCAATACGCGCGCGCAGGCCGAGTTGTGGCATCAGG
CCTTGAGCGCGGTGTGGCCGGATGAGTTGGCCACGCTGGCGCTGCATCACGGCTCGCTGGATCCATCGCTACGCGCGGCC
GCCGAACGCGGGCTGGCCGACGGCAGCCTGCGCTGCGTGGTGGCCACCTCCAGTCTGGATCTGGGCGTCGACTTCCCGGC
CGTGGATCAGGTGCTGCAGGTCGGCAGCCCGAAAGGCATCGCGCGCCTGCTGCAACGCGCCGGGCGCGCACGCCATCGTC
CCGGCGAATCCGGGCACGTGGTGTGCGTGCCTTCGCATGCGCTGGAATTGGTCGAATACGCCGCGGCACGTCGCGCGCTG
GTGCACGGCCATATCGAAGCGCGTCTACCGCCACGGTTGTCGCTGGACGTACTGGCGCAGCACTGCGTCACCCTCGCCCT
CGGCGGCGGCTTCCACGCCGATGCGTTGTTCGAGGAAGTGCGCGGTACCGATGCCTTCGCCGCGCTGGAGAAAACCACCT
GGAACGCGGTGCTGGATTTCATCGTGCAAGGCGGCAGCGCGCTGGCGCATTACCCGGACTTCCACAAGGTGGTGCGCGAC
GACGAGGGTCTGTACCGCGTGATCGACCGACGCGTCGCGCTGCGGCACCGGCTGTCCATCGGCACGATCACCAGCGACGG
CAGCGTGCGCGTGCAGTTCCTGCGCGGCGGGCGGCTGGGCGCGGTGGAAGAACAATTCATCGGCCGCCTGCGCCGCGGCG
ACCGCTTCCAGTTCGCCGGCCGCCTGCTGGAACTGGTGCGCCTGGAAGACATGACCGCCTACGTGCGCGTGGCCAAGGGC
GGCAGTGGCGTGGTGCCGAAATGGATGGGCGGGCGCATGCCGTTGTCGTCGGCGCTGGGCCGCGAGGTGGAAGCGGTGTT
CGCCGACCCTGGCGATGCGCCGGAGATGCAGGCACTGGCGCCGTTGCTGCACCTGCAGGGCTCGCTTTCTTCGCTGCCGG
GGCCGGACCATCTGCTGGTGGAAAGCGTCAAGGCGCGCGACGGCCGCCACGTCTTCGTCTACCCGTTCGCCGGCAGGCAG
GTCAACGAAGGCCTGGCCGCGTTGCTCGCGGCACGCTGGGGCCGGCGCCAGCGCAATACCTTCAGCTTCGCTGCCAATGA
CTATGGATTTGTGCTGTCGCCGGCGCAGGATGTCGACATCGATGCCGATGTACTGCAAGCCCTGCTCTCGCCGGTGGGCC
TGTTCGACGATCTGCGCGACAGCCTCAATCTGGGCGAGTTGGCGCGCCGGCAATTTCGCGAGATCGCGCGCGTGGCGGGA
TTGTTGTCGCCCTCGTTGCCTGGGCGTGCGCCGCGCAGCCTGCGTCAGCTGCAGGCCTCCAGTGGCTTGCTATACGACGT
ATTGCAACGCTTCGACCCCGATCACCTGCTGCTCGCCCAGGCCGAGCGCGAAGTGTTCGAAGGCCAGCTCGAACTGGCGC
GGCTTGCGCATGCGCTGGAAGATTGCGCGCGCCGTGCGTTGCGTCTGTGCAAACCGCGCAGCCTCACTCCATTGTCGTTT
CCACTCTGGGCCGAACGCGTGCGCGGGCAACTGAGTACCGAAGACTGGAAGGCGCGCGTCTTGCGCGCTGCCCAACAACT
GGAGCGCAAGCATGGGCGATAG

Upstream 100 bases:

>100_bases
AGTCCGGCATCGCGGTGCGCTTCCCGCGCATCCTGCGCTGGCGTCACGACAAGCCGATGGCCGAAGCCGATCATCTGAGC
ACCCTGCAGGCACTGGCGCG

Downstream 100 bases:

>100_bases
CGTGCAGCTGCAGCTGGCCGGCGAAACCGTGGAATTGCTCGGCGAACGCGCGTTGTATCGGCCGGCACAACGTGCGCTGT
TGATCGCCGATCTGCATCTG

Product: ATP-dependent helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 833; Mature: 832

Protein sequence:

>833_residues
MSVTQHTYGTPLQQWRAWFAQRGWAPLPFQRDVWKRYLDGESGLLHTPTGSGKTLAAFGGPLLEALAARGRKSPRKPGKP
TSPARRQPQRNLQVLWITPLRALAADTARALREPVDALGLDWQVGLRTGDASARDKRLARSGKLDVLVTTPESLALLLSY
PDTAPQLSALRCVIVDEWHELLGNKRGVLLQLCLARLRGWTPHLRIWGLSATLGNLSQARDVLLPHRPEAALVSGVKPRT
MTLETLLPDSGERFPWAGHLGLAQLARVLQKIMQQRTSLVFTNTRAQAELWHQALSAVWPDELATLALHHGSLDPSLRAA
AERGLADGSLRCVVATSSLDLGVDFPAVDQVLQVGSPKGIARLLQRAGRARHRPGESGHVVCVPSHALELVEYAAARRAL
VHGHIEARLPPRLSLDVLAQHCVTLALGGGFHADALFEEVRGTDAFAALEKTTWNAVLDFIVQGGSALAHYPDFHKVVRD
DEGLYRVIDRRVALRHRLSIGTITSDGSVRVQFLRGGRLGAVEEQFIGRLRRGDRFQFAGRLLELVRLEDMTAYVRVAKG
GSGVVPKWMGGRMPLSSALGREVEAVFADPGDAPEMQALAPLLHLQGSLSSLPGPDHLLVESVKARDGRHVFVYPFAGRQ
VNEGLAALLAARWGRRQRNTFSFAANDYGFVLSPAQDVDIDADVLQALLSPVGLFDDLRDSLNLGELARRQFREIARVAG
LLSPSLPGRAPRSLRQLQASSGLLYDVLQRFDPDHLLLAQAEREVFEGQLELARLAHALEDCARRALRLCKPRSLTPLSF
PLWAERVRGQLSTEDWKARVLRAAQQLERKHGR

Sequences:

>Translated_833_residues
MSVTQHTYGTPLQQWRAWFAQRGWAPLPFQRDVWKRYLDGESGLLHTPTGSGKTLAAFGGPLLEALAARGRKSPRKPGKP
TSPARRQPQRNLQVLWITPLRALAADTARALREPVDALGLDWQVGLRTGDASARDKRLARSGKLDVLVTTPESLALLLSY
PDTAPQLSALRCVIVDEWHELLGNKRGVLLQLCLARLRGWTPHLRIWGLSATLGNLSQARDVLLPHRPEAALVSGVKPRT
MTLETLLPDSGERFPWAGHLGLAQLARVLQKIMQQRTSLVFTNTRAQAELWHQALSAVWPDELATLALHHGSLDPSLRAA
AERGLADGSLRCVVATSSLDLGVDFPAVDQVLQVGSPKGIARLLQRAGRARHRPGESGHVVCVPSHALELVEYAAARRAL
VHGHIEARLPPRLSLDVLAQHCVTLALGGGFHADALFEEVRGTDAFAALEKTTWNAVLDFIVQGGSALAHYPDFHKVVRD
DEGLYRVIDRRVALRHRLSIGTITSDGSVRVQFLRGGRLGAVEEQFIGRLRRGDRFQFAGRLLELVRLEDMTAYVRVAKG
GSGVVPKWMGGRMPLSSALGREVEAVFADPGDAPEMQALAPLLHLQGSLSSLPGPDHLLVESVKARDGRHVFVYPFAGRQ
VNEGLAALLAARWGRRQRNTFSFAANDYGFVLSPAQDVDIDADVLQALLSPVGLFDDLRDSLNLGELARRQFREIARVAG
LLSPSLPGRAPRSLRQLQASSGLLYDVLQRFDPDHLLLAQAEREVFEGQLELARLAHALEDCARRALRLCKPRSLTPLSF
PLWAERVRGQLSTEDWKARVLRAAQQLERKHGR
>Mature_832_residues
SVTQHTYGTPLQQWRAWFAQRGWAPLPFQRDVWKRYLDGESGLLHTPTGSGKTLAAFGGPLLEALAARGRKSPRKPGKPT
SPARRQPQRNLQVLWITPLRALAADTARALREPVDALGLDWQVGLRTGDASARDKRLARSGKLDVLVTTPESLALLLSYP
DTAPQLSALRCVIVDEWHELLGNKRGVLLQLCLARLRGWTPHLRIWGLSATLGNLSQARDVLLPHRPEAALVSGVKPRTM
TLETLLPDSGERFPWAGHLGLAQLARVLQKIMQQRTSLVFTNTRAQAELWHQALSAVWPDELATLALHHGSLDPSLRAAA
ERGLADGSLRCVVATSSLDLGVDFPAVDQVLQVGSPKGIARLLQRAGRARHRPGESGHVVCVPSHALELVEYAAARRALV
HGHIEARLPPRLSLDVLAQHCVTLALGGGFHADALFEEVRGTDAFAALEKTTWNAVLDFIVQGGSALAHYPDFHKVVRDD
EGLYRVIDRRVALRHRLSIGTITSDGSVRVQFLRGGRLGAVEEQFIGRLRRGDRFQFAGRLLELVRLEDMTAYVRVAKGG
SGVVPKWMGGRMPLSSALGREVEAVFADPGDAPEMQALAPLLHLQGSLSSLPGPDHLLVESVKARDGRHVFVYPFAGRQV
NEGLAALLAARWGRRQRNTFSFAANDYGFVLSPAQDVDIDADVLQALLSPVGLFDDLRDSLNLGELARRQFREIARVAGL
LSPSLPGRAPRSLRQLQASSGLLYDVLQRFDPDHLLLAQAEREVFEGQLELARLAHALEDCARRALRLCKPRSLTPLSFP
LWAERVRGQLSTEDWKARVLRAAQQLERKHGR

Specific function: Unknown

COG id: COG1201

COG function: function code R; Lhr-like helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1787942, Length=880, Percent_Identity=27.9545454545455, Blast_Score=212, Evalue=6e-56,
Organism=Saccharomyces cerevisiae, GI6321020, Length=412, Percent_Identity=25.4854368932039, Blast_Score=87, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR013701
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR017170 [H]

Pfam domain/function: PF00270 DEAD; PF08494 DEAD_assoc; PF00271 Helicase_C [H]

EC number: 3.6.1.- [C]

Molecular weight: Translated: 91672; Mature: 91540

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTQHTYGTPLQQWRAWFAQRGWAPLPFQRDVWKRYLDGESGLLHTPTGSGKTLAAFGG
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCEEHHHCC
PLLEALAARGRKSPRKPGKPTSPARRQPQRNLQVLWITPLRALAADTARALREPVDALGL
HHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCEEEEECHHHHHHHHHHHHHHCHHHHHCC
DWQVGLRTGDASARDKRLARSGKLDVLVTTPESLALLLSYPDTAPQLSALRCVIVDEWHE
CEEEEEECCCCCHHHHHHHHCCCEEEEEECHHHEEEEEECCCCCCCHHHHHHHHHHHHHH
LLGNKRGVLLQLCLARLRGWTPHLRIWGLSATLGNLSQARDVLLPHRPEAALVSGVKPRT
HHCCCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCE
MTLETLLPDSGERFPWAGHLGLAQLARVLQKIMQQRTSLVFTNTRAQAELWHQALSAVWP
EEHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHHCH
DELATLALHHGSLDPSLRAAAERGLADGSLRCVVATSSLDLGVDFPAVDQVLQVGSPKGI
HHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCHHH
ARLLQRAGRARHRPGESGHVVCVPSHALELVEYAAARRALVHGHIEARLPPRLSLDVLAQ
HHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHH
HCVTLALGGGFHADALFEEVRGTDAFAALEKTTWNAVLDFIVQGGSALAHYPDFHKVVRD
HHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCC
DEGLYRVIDRRVALRHRLSIGTITSDGSVRVQFLRGGRLGAVEEQFIGRLRRGDRFQFAG
CCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHH
RLLELVRLEDMTAYVRVAKGGSGVVPKWMGGRMPLSSALGREVEAVFADPGDAPEMQALA
HHHHHHHHHHHHEEEEEECCCCCCCCHHCCCCCCHHHHHCCCEEEEECCCCCCCHHHHHH
PLLHLQGSLSSLPGPDHLLVESVKARDGRHVFVYPFAGRQVNEGLAALLAARWGRRQRNT
HHHHHCCCHHCCCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCC
FSFAANDYGFVLSPAQDVDIDADVLQALLSPVGLFDDLRDSLNLGELARRQFREIARVAG
EEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LLSPSLPGRAPRSLRQLQASSGLLYDVLQRFDPDHLLLAQAEREVFEGQLELARLAHALE
HHCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DCARRALRLCKPRSLTPLSFPLWAERVRGQLSTEDWKARVLRAAQQLERKHGR
HHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVTQHTYGTPLQQWRAWFAQRGWAPLPFQRDVWKRYLDGESGLLHTPTGSGKTLAAFGG
CCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCEEHHHCC
PLLEALAARGRKSPRKPGKPTSPARRQPQRNLQVLWITPLRALAADTARALREPVDALGL
HHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCEEEEECHHHHHHHHHHHHHHCHHHHHCC
DWQVGLRTGDASARDKRLARSGKLDVLVTTPESLALLLSYPDTAPQLSALRCVIVDEWHE
CEEEEEECCCCCHHHHHHHHCCCEEEEEECHHHEEEEEECCCCCCCHHHHHHHHHHHHHH
LLGNKRGVLLQLCLARLRGWTPHLRIWGLSATLGNLSQARDVLLPHRPEAALVSGVKPRT
HHCCCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCE
MTLETLLPDSGERFPWAGHLGLAQLARVLQKIMQQRTSLVFTNTRAQAELWHQALSAVWP
EEHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHHCH
DELATLALHHGSLDPSLRAAAERGLADGSLRCVVATSSLDLGVDFPAVDQVLQVGSPKGI
HHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCHHH
ARLLQRAGRARHRPGESGHVVCVPSHALELVEYAAARRALVHGHIEARLPPRLSLDVLAQ
HHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHH
HCVTLALGGGFHADALFEEVRGTDAFAALEKTTWNAVLDFIVQGGSALAHYPDFHKVVRD
HHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCC
DEGLYRVIDRRVALRHRLSIGTITSDGSVRVQFLRGGRLGAVEEQFIGRLRRGDRFQFAG
CCHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHH
RLLELVRLEDMTAYVRVAKGGSGVVPKWMGGRMPLSSALGREVEAVFADPGDAPEMQALA
HHHHHHHHHHHHEEEEEECCCCCCCCHHCCCCCCHHHHHCCCEEEEECCCCCCCHHHHHH
PLLHLQGSLSSLPGPDHLLVESVKARDGRHVFVYPFAGRQVNEGLAALLAARWGRRQRNT
HHHHHCCCHHCCCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCC
FSFAANDYGFVLSPAQDVDIDADVLQALLSPVGLFDDLRDSLNLGELARRQFREIARVAG
EEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LLSPSLPGRAPRSLRQLQASSGLLYDVLQRFDPDHLLLAQAEREVFEGQLELARLAHALE
HHCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DCARRALRLCKPRSLTPLSFPLWAERVRGQLSTEDWKARVLRAAQQLERKHGR
HHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on acid anhydrides [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]