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The map label for this gene is asdII [H]

Identifier: 78046891

GI number: 78046891

Start: 1500360

End: 1501943

Strand: Reverse

Name: asdII [H]

Synonym: XCV1335

Alternate gene names: 78046891

Gene position: 1501943-1500360 (Counterclockwise)

Preceding gene: 78046893

Following gene: 78046888

Centisome position: 29.0

GC content: 63.95

Gene sequence:

>1584_bases
ATGCAGTGGATTTCCCCCGCGTTGCAGGCATCGCGCAGGCAGCTGTTGAACGCCGTTTTCGTCGCCGCCGCGCTTGCCAG
CGTGCCGGCCAGCTTCGCTGCCGAGGTCAAAGCCAGCGGCACCTTGCGCGTGGACCAGCCCGGCGCGCAGGTGTCACGGC
AACTGTTCGGCCAATTCGCCGAGCATCTGGGCACCGGCATCTATGGTGGCGTGTGGGTGGGCGAGGAATCGCCGATCCCC
AATACGCGCGGCTATCGCAACGACGTGGTCGCCGCGCTGAAAGCCATTGCCGTGCCCAACATCCGCTGGCCTGGAGGTTG
CTTCGCCGACGAATACCACTGGCGCGATGGCGTCGGCACGCCGGGCAAGCGCCCGATCCGGGTCAACACGCACTGGGGCG
GTGTGGAAGAGTCCAACCGTTTCGGCACGCACGAGTTCATGGACTTCACCGAATTGCTCGGCACCCAGGCCTATGTCGCC
GGGAATGTGGGCGATGCTGCGCCGGAGGAGATTGCGCAGTGGACCGAATACATGACCGCGCCGACACGCTCGAGCCTGGC
CAACGAGCGCCGCGCCAATGGCCGCGATGCGCCCTGGCAGGTTCCCTACTTCGGTGTGGGCAACGAGCTGTGGGGCTGCG
GCGGCAATATGCGCGTGGAGTACGCAGCCGATGTGTTTCGCCGCTACCAGACCTTCGTCAAGTCGCCGGCCAACCAGAAG
ATTTTCAAGATCGCGCCCGGCCCAAGCGACGACGACTATCACTGGACCGAGGTGATGATGCGCGAGGCCACCAAGTTCAT
GGATGGGCTGAGCATGCACTACTACACCATTCCCGGTGGCTGGCCGCCGCGCGCGTCTTCGACCACGTTCGACGAAACCG
CGTGGATCCAGACGTTGTCGCGCACGCTGGTGATGGACGAGCTGATCACCAAGCACAGCGCGATCATGGACAAGTACGAC
CCGGCCAGGAAAGTGTCCCTGATCGTGGACGAATGGGGCACCTGGTATGCGCCATTGCCAGGCACCAATCCCGGCTTCCT
GCAGCAGCAAAACAGCCTGCGTGACGCGCTGGTGGCGTCGCTCAACTTCGACATCTTCAGCCAGCATGCCGAGCGTGTGC
GCATGGCCAACATCGCGCAGATGGTCAATGTGCTGCAGGCGATGATCCTCACCGATGGCGATAAGATGGTGCTGACGCCG
ACCTATCACGTGTTTGCGCTTTACAAGCCCTACCAGGACGCCACACACCTGCCGCTGCAATTGCAGACACCTGCGTATCG
TCATGGCGACACGCAGGTGCCGGCCGTGCACGGCTCGGCGGTCAAGGCGAAGGACGGCCATGTGTATCTCGCGCTGACCA
ACCTGGACGCGACTGCGGCGGCGGCTGTGAGCGTGCAGGTGGAAGGGCTGCCGCTGCGTGCGGTGGAGGGACAGATCCTG
ACCGCACCGGCGATCACCACGTACAACACCTATGCGCAGCCAAAGGCCGTTGCGCCGGCGGCATTCAAGGGCGCACGTGT
CCAAGGCAAGGCAGTGAACGTGGCGCTGCCGGCGCATTCGATCGTGATGCTCAAGTTGCGATGA

Upstream 100 bases:

>100_bases
GCAGCAATACAAAGGGCGGCCACCGGCACTACGCTAGCCGCGCACTTCCCATCGCAGCAGCACCCACCCGACCATCGACC
AGCACAGGAGCACCGACCCG

Downstream 100 bases:

>100_bases
GCGATCGAATTCAATGTACAGAGCCTGCCCAGACGCATGGCGTGTCGGGCACCGCCAGCCGTGTGGGCGCCGTATTGCCT
CGTTCGGACGCGCCTTCAAA

Product: putative alpha-L-arabinofuranosidase precursor

Products: NA

Alternate protein names: Arabinosidase 2 [H]

Number of amino acids: Translated: 527; Mature: 527

Protein sequence:

>527_residues
MQWISPALQASRRQLLNAVFVAAALASVPASFAAEVKASGTLRVDQPGAQVSRQLFGQFAEHLGTGIYGGVWVGEESPIP
NTRGYRNDVVAALKAIAVPNIRWPGGCFADEYHWRDGVGTPGKRPIRVNTHWGGVEESNRFGTHEFMDFTELLGTQAYVA
GNVGDAAPEEIAQWTEYMTAPTRSSLANERRANGRDAPWQVPYFGVGNELWGCGGNMRVEYAADVFRRYQTFVKSPANQK
IFKIAPGPSDDDYHWTEVMMREATKFMDGLSMHYYTIPGGWPPRASSTTFDETAWIQTLSRTLVMDELITKHSAIMDKYD
PARKVSLIVDEWGTWYAPLPGTNPGFLQQQNSLRDALVASLNFDIFSQHAERVRMANIAQMVNVLQAMILTDGDKMVLTP
TYHVFALYKPYQDATHLPLQLQTPAYRHGDTQVPAVHGSAVKAKDGHVYLALTNLDATAAAAVSVQVEGLPLRAVEGQIL
TAPAITTYNTYAQPKAVAPAAFKGARVQGKAVNVALPAHSIVMLKLR

Sequences:

>Translated_527_residues
MQWISPALQASRRQLLNAVFVAAALASVPASFAAEVKASGTLRVDQPGAQVSRQLFGQFAEHLGTGIYGGVWVGEESPIP
NTRGYRNDVVAALKAIAVPNIRWPGGCFADEYHWRDGVGTPGKRPIRVNTHWGGVEESNRFGTHEFMDFTELLGTQAYVA
GNVGDAAPEEIAQWTEYMTAPTRSSLANERRANGRDAPWQVPYFGVGNELWGCGGNMRVEYAADVFRRYQTFVKSPANQK
IFKIAPGPSDDDYHWTEVMMREATKFMDGLSMHYYTIPGGWPPRASSTTFDETAWIQTLSRTLVMDELITKHSAIMDKYD
PARKVSLIVDEWGTWYAPLPGTNPGFLQQQNSLRDALVASLNFDIFSQHAERVRMANIAQMVNVLQAMILTDGDKMVLTP
TYHVFALYKPYQDATHLPLQLQTPAYRHGDTQVPAVHGSAVKAKDGHVYLALTNLDATAAAAVSVQVEGLPLRAVEGQIL
TAPAITTYNTYAQPKAVAPAAFKGARVQGKAVNVALPAHSIVMLKLR
>Mature_527_residues
MQWISPALQASRRQLLNAVFVAAALASVPASFAAEVKASGTLRVDQPGAQVSRQLFGQFAEHLGTGIYGGVWVGEESPIP
NTRGYRNDVVAALKAIAVPNIRWPGGCFADEYHWRDGVGTPGKRPIRVNTHWGGVEESNRFGTHEFMDFTELLGTQAYVA
GNVGDAAPEEIAQWTEYMTAPTRSSLANERRANGRDAPWQVPYFGVGNELWGCGGNMRVEYAADVFRRYQTFVKSPANQK
IFKIAPGPSDDDYHWTEVMMREATKFMDGLSMHYYTIPGGWPPRASSTTFDETAWIQTLSRTLVMDELITKHSAIMDKYD
PARKVSLIVDEWGTWYAPLPGTNPGFLQQQNSLRDALVASLNFDIFSQHAERVRMANIAQMVNVLQAMILTDGDKMVLTP
TYHVFALYKPYQDATHLPLQLQTPAYRHGDTQVPAVHGSAVKAKDGHVYLALTNLDATAAAAVSVQVEGLPLRAVEGQIL
TAPAITTYNTYAQPKAVAPAAFKGARVQGKAVNVALPAHSIVMLKLR

Specific function: Unknown

COG id: COG3534

COG function: function code G; Alpha-L-arabinofuranosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 51 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010720
- InterPro:   IPR013780
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF06964 Alpha-L-AF_C [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 57878; Mature: 57878

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS00107 PROTEIN_KINASE_ATP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWISPALQASRRQLLNAVFVAAALASVPASFAAEVKASGTLRVDQPGAQVSRQLFGQFA
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH
EHLGTGIYGGVWVGEESPIPNTRGYRNDVVAALKAIAVPNIRWPGGCFADEYHWRDGVGT
HHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PGKRPIRVNTHWGGVEESNRFGTHEFMDFTELLGTQAYVAGNVGDAAPEEIAQWTEYMTA
CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCC
PTRSSLANERRANGRDAPWQVPYFGVGNELWGCGGNMRVEYAADVFRRYQTFVKSPANQK
CCHHHHHHHHHCCCCCCCEECCEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCC
IFKIAPGPSDDDYHWTEVMMREATKFMDGLSMHYYTIPGGWPPRASSTTFDETAWIQTLS
EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
RTLVMDELITKHSAIMDKYDPARKVSLIVDEWGTWYAPLPGTNPGFLQQQNSLRDALVAS
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHH
LNFDIFSQHAERVRMANIAQMVNVLQAMILTDGDKMVLTPTYHVFALYKPYQDATHLPLQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEEECCCCCCCCCCEE
LQTPAYRHGDTQVPAVHGSAVKAKDGHVYLALTNLDATAAAAVSVQVEGLPLRAVEGQIL
ECCCCCCCCCCCCCEECCCEEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCEEE
TAPAITTYNTYAQPKAVAPAAFKGARVQGKAVNVALPAHSIVMLKLR
ECCCEEECCCCCCCCCCCCHHHCCCEEECCEEEEEECCCEEEEEEEC
>Mature Secondary Structure
MQWISPALQASRRQLLNAVFVAAALASVPASFAAEVKASGTLRVDQPGAQVSRQLFGQFA
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH
EHLGTGIYGGVWVGEESPIPNTRGYRNDVVAALKAIAVPNIRWPGGCFADEYHWRDGVGT
HHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PGKRPIRVNTHWGGVEESNRFGTHEFMDFTELLGTQAYVAGNVGDAAPEEIAQWTEYMTA
CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCC
PTRSSLANERRANGRDAPWQVPYFGVGNELWGCGGNMRVEYAADVFRRYQTFVKSPANQK
CCHHHHHHHHHCCCCCCCEECCEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCC
IFKIAPGPSDDDYHWTEVMMREATKFMDGLSMHYYTIPGGWPPRASSTTFDETAWIQTLS
EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
RTLVMDELITKHSAIMDKYDPARKVSLIVDEWGTWYAPLPGTNPGFLQQQNSLRDALVAS
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHH
LNFDIFSQHAERVRMANIAQMVNVLQAMILTDGDKMVLTPTYHVFALYKPYQDATHLPLQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEEECCCCCCCCCCEE
LQTPAYRHGDTQVPAVHGSAVKAKDGHVYLALTNLDATAAAAVSVQVEGLPLRAVEGQIL
ECCCCCCCCCCCCCEECCCEEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCEEE
TAPAITTYNTYAQPKAVAPAAFKGARVQGKAVNVALPAHSIVMLKLR
ECCCEEECCCCCCCCCCCCHHHCCCEEECCEEEEEECCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA