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The map label for this gene is yagA [C]

Identifier: 78046852

GI number: 78046852

Start: 1454609

End: 1455436

Strand: Reverse

Name: yagA [C]

Synonym: XCV1296

Alternate gene names: 78046852

Gene position: 1455436-1454609 (Counterclockwise)

Preceding gene: 78046853

Following gene: 78046850

Centisome position: 28.11

GC content: 64.25

Gene sequence:

>828_bases
ATGGTGAGGCCATCTCAGCGACGCGAGATGGCCCAATCGGCAGTCACGAGCGGGCGTACGAACATCCGCCACGCCTGCCA
GGCCTTCGCGGTGAGCGAGACCTGCTTCCGCTACCAGGCCAAGGCCAGCGAGCAGAACGCCCGGATCGCCGACTGGCTGG
TCCGCCTGACGACCGCCCATCGCGACTGGGGCTTTGGCCTGTGCTACCTGTACCTGCGCAACGTGAAGGGCTTTGGCTGG
AATCACAAGCGGGTCTACCGGATCTACCGCGAGCTGGAGTTGAACCTGCGGATCAAGCCGAGGAAGCGGCTGGTGCGTGA
GCGGCCCGAGCCTCTGGCGGTGCCGGAGGCTATCAACCAGGTCTGGTCGATGGACTTCATGCACGACCAGTTGGCCGACG
GCCGCAGCTTCCGGCTGTTCAATGTGCTCGACGACTTCAATCGCGAGGGGCTGGGGATCGAGGTGGATCTGTCGCTGCCG
TCAGCCCGTGTGATCCGATCGCTGGAGCAGATCATCGAGTGGCGCGGCAAGCCCGCCGTGATCCGCTGCGACAACGGCCC
TGAATACATCAGTGGCGCGTTGCTGTCCTGGGCGCAGCGGCATGGTATCCGGGTCGAGCACATCCAGCCGGGCAAGCCAC
AGCAGAACGCCTACGTTGAACGCTACAACCGCACCATCCGCTACGCCTGGCTCGCCCAAACCCTGTTCGACACCATCGAC
CAGGTGCAGGACAAAGCCACCCGCTGGCTATGGACGTACAACCACGAGCGTCCGAATATGGCGCTCGGCGGCATCACGCC
TGCCATGAAGTTGGCGATGGCCGCTTAG

Upstream 100 bases:

>100_bases
CGCGCATGAAGGAGCTGGAGGAGGAGAACCGCCGGCTCAAGAAGATGTACGCCGAGGCGCAGCTCAGTACCGACCTGCTG
AAGGAAGCGCTCGCAAAAAA

Downstream 100 bases:

>100_bases
CTCCACTTCTGGCGACCGCTAAAAGTGGGGGGATTACCATCGCGAGCAGGAGAGCCGGGAGCGTTGGTGCGCCTACCACG
GCTATTCGATGGTTCGCCCG

Product: ISxac2 transposase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MVRPSQRREMAQSAVTSGRTNIRHACQAFAVSETCFRYQAKASEQNARIADWLVRLTTAHRDWGFGLCYLYLRNVKGFGW
NHKRVYRIYRELELNLRIKPRKRLVRERPEPLAVPEAINQVWSMDFMHDQLADGRSFRLFNVLDDFNREGLGIEVDLSLP
SARVIRSLEQIIEWRGKPAVIRCDNGPEYISGALLSWAQRHGIRVEHIQPGKPQQNAYVERYNRTIRYAWLAQTLFDTID
QVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA

Sequences:

>Translated_275_residues
MVRPSQRREMAQSAVTSGRTNIRHACQAFAVSETCFRYQAKASEQNARIADWLVRLTTAHRDWGFGLCYLYLRNVKGFGW
NHKRVYRIYRELELNLRIKPRKRLVRERPEPLAVPEAINQVWSMDFMHDQLADGRSFRLFNVLDDFNREGLGIEVDLSLP
SARVIRSLEQIIEWRGKPAVIRCDNGPEYISGALLSWAQRHGIRVEHIQPGKPQQNAYVERYNRTIRYAWLAQTLFDTID
QVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA
>Mature_275_residues
MVRPSQRREMAQSAVTSGRTNIRHACQAFAVSETCFRYQAKASEQNARIADWLVRLTTAHRDWGFGLCYLYLRNVKGFGW
NHKRVYRIYRELELNLRIKPRKRLVRERPEPLAVPEAINQVWSMDFMHDQLADGRSFRLFNVLDDFNREGLGIEVDLSLP
SARVIRSLEQIIEWRGKPAVIRCDNGPEYISGALLSWAQRHGIRVEHIQPGKPQQNAYVERYNRTIRYAWLAQTLFDTID
QVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=166, Percent_Identity=31.3253012048193, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 32084; Mature: 32084

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRPSQRREMAQSAVTSGRTNIRHACQAFAVSETCFRYQAKASEQNARIADWLVRLTTAH
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
RDWGFGLCYLYLRNVKGFGWNHKRVYRIYRELELNLRIKPRKRLVRERPEPLAVPEAINQ
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEECHHHHHHHCCCCCCCHHHHHHH
VWSMDFMHDQLADGRSFRLFNVLDDFNREGLGIEVDLSLPSARVIRSLEQIIEWRGKPAV
HHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCE
IRCDNGPEYISGALLSWAQRHGIRVEHIQPGKPQQNAYVERYNRTIRYAWLAQTLFDTID
EEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
QVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA
HHHHHHHHEEEEECCCCCCEEECCCCHHHHHHHCC
>Mature Secondary Structure
MVRPSQRREMAQSAVTSGRTNIRHACQAFAVSETCFRYQAKASEQNARIADWLVRLTTAH
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
RDWGFGLCYLYLRNVKGFGWNHKRVYRIYRELELNLRIKPRKRLVRERPEPLAVPEAINQ
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEECHHHHHHHCCCCCCCHHHHHHH
VWSMDFMHDQLADGRSFRLFNVLDDFNREGLGIEVDLSLPSARVIRSLEQIIEWRGKPAV
HHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCE
IRCDNGPEYISGALLSWAQRHGIRVEHIQPGKPQQNAYVERYNRTIRYAWLAQTLFDTID
EEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
QVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA
HHHHHHHHEEEEECCCCCCEEECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]