| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is yhxD [H]
Identifier: 78046760
GI number: 78046760
Start: 1347120
End: 1348022
Strand: Reverse
Name: yhxD [H]
Synonym: XCV1204
Alternate gene names: 78046760
Gene position: 1348022-1347120 (Counterclockwise)
Preceding gene: 78046761
Following gene: 78046759
Centisome position: 26.03
GC content: 61.9
Gene sequence:
>903_bases ATGTCCGGCAGCAAGAATCAGTACGAAATGCAGAACCCGTTGACCCAGTTCCCGCAGCCGCAATTTCCGCACCAAACCCA GCAGGCTCCGGGCACCATCCACGAACTGCAGCCCAAGGCAGACCATGGCGAGCACAGCTACAAGGGCTTTGGTCGTCTGC AGGGCCGCAAGGCCCTGATCACCGGCGCAGATTCCGGCATCGGGCGCGCCACCGCCATTGCCTTTGCACGCGAAGGTGCG GATATCGTGCTCAATTACCTGCCTGAAGAAGAACAGGACGCAGCCGAAGTGGTGCAGCTGATCCAGGCAGAAGGGCGCAA AGCCACCAGCGTTCCGGGTGACCTCAAGAACGAGGCGTTTTGCACCGAACTGGTGGACCGTGCAGTGAAAGAGCTCGGCG GCCTGGATGTCCTGGTCAATATCGCGGGCAAACAGACCGCCGTGAAAGACATCGCAGACATCACGACCGAGCAGTTCGAC GCCACCTACAAGACCAACGTCTATGCGATGTTCTGGCTGTGCAAGGCCGCCATCCCGCATTTGCCGCCGGGCGCATCCAT CATCAACACCGGCTCGATCCAGTCGTACCAGCCCTCGCCGACGCTGCTCGACTACGCCTCCACCAAGGCGGCCATCGTCA ACTTCACCAAGGGCTTGGCGCAGCAAGTTGCCGAGAAGGGGATCCGCGTCAACGCAGTCGCGCCCGGACCGGTGTGGACG CCGCTGCAGCCCAGCGGTGGTCAGCCGCCGGAAAAGATTCCCGATTTCGGCTCGGAGACGCCGCTCAAGCGCGCCGGCCA GCCGGTAGAAATGGCGCCGCTTTATGTGATTCTGGCATCGCAGGAATCGAGCTACGTCACCGGTGAAGTGTTCGGTGCCA CCGGCGGTCTGCTGTTGTCTTGA
Upstream 100 bases:
>100_bases TTTCGTTCACTGATACGCATCGCCTCGCTTTCCACACTGCCCGTCATCGGTACGCACGACGACTGCGTGCCTGCCCTTCC CCCAATGCAGGAGAGTGTGC
Downstream 100 bases:
>100_bases GCCGCCCCTGCGCCGAGTTTCAGCGTGATGCCACCGGCACCTTGCCGATCGCCGCTTATGCGGCGATCGGCGACGGGCGC TCGGTGGCGCTATGCGGTGC
Product: oxidoreductase
Products: NA
Alternate protein names: ORFY [H]
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MSGSKNQYEMQNPLTQFPQPQFPHQTQQAPGTIHELQPKADHGEHSYKGFGRLQGRKALITGADSGIGRATAIAFAREGA DIVLNYLPEEEQDAAEVVQLIQAEGRKATSVPGDLKNEAFCTELVDRAVKELGGLDVLVNIAGKQTAVKDIADITTEQFD ATYKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSPTLLDYASTKAAIVNFTKGLAQQVAEKGIRVNAVAPGPVWT PLQPSGGQPPEKIPDFGSETPLKRAGQPVEMAPLYVILASQESSYVTGEVFGATGGLLLS
Sequences:
>Translated_300_residues MSGSKNQYEMQNPLTQFPQPQFPHQTQQAPGTIHELQPKADHGEHSYKGFGRLQGRKALITGADSGIGRATAIAFAREGA DIVLNYLPEEEQDAAEVVQLIQAEGRKATSVPGDLKNEAFCTELVDRAVKELGGLDVLVNIAGKQTAVKDIADITTEQFD ATYKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSPTLLDYASTKAAIVNFTKGLAQQVAEKGIRVNAVAPGPVWT PLQPSGGQPPEKIPDFGSETPLKRAGQPVEMAPLYVILASQESSYVTGEVFGATGGLLLS >Mature_299_residues SGSKNQYEMQNPLTQFPQPQFPHQTQQAPGTIHELQPKADHGEHSYKGFGRLQGRKALITGADSGIGRATAIAFAREGAD IVLNYLPEEEQDAAEVVQLIQAEGRKATSVPGDLKNEAFCTELVDRAVKELGGLDVLVNIAGKQTAVKDIADITTEQFDA TYKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSPTLLDYASTKAAIVNFTKGLAQQVAEKGIRVNAVAPGPVWTP LQPSGGQPPEKIPDFGSETPLKRAGQPVEMAPLYVILASQESSYVTGEVFGATGGLLLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=32.520325203252, Blast_Score=121, Evalue=1e-27, Organism=Homo sapiens, GI66933014, Length=257, Percent_Identity=33.852140077821, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=29.2682926829268, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=28.5714285714286, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI15277342, Length=263, Percent_Identity=31.5589353612167, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=31.9672131147541, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=27.3092369477912, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI10190704, Length=264, Percent_Identity=30.6818181818182, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=30.8900523560209, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI59889578, Length=228, Percent_Identity=29.3859649122807, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=31.1475409836066, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI4758504, Length=264, Percent_Identity=29.9242424242424, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=29.1338582677165, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI210032110, Length=188, Percent_Identity=29.7872340425532, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI142976729, Length=212, Percent_Identity=30.188679245283, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=29.0155440414508, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI40254986, Length=195, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI31542939, Length=201, Percent_Identity=27.363184079602, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1789378, Length=288, Percent_Identity=61.1111111111111, Blast_Score=365, Evalue=1e-102, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=35.9183673469388, Blast_Score=138, Evalue=5e-34, Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=34.9397590361446, Blast_Score=129, Evalue=3e-31, Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=30.9236947791165, Blast_Score=118, Evalue=5e-28, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=31.7073170731707, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=33.6032388663968, Blast_Score=111, Evalue=7e-26, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=28.8, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=30.1960784313725, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=29.4820717131474, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=30.5785123966942, Blast_Score=97, Evalue=9e-22, Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=26.9076305220884, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=28.9156626506024, Blast_Score=70, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=31.3492063492063, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=33.0798479087452, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=33.4600760456274, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=34.6007604562738, Blast_Score=118, Evalue=4e-27, Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=33.8345864661654, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=31.9548872180451, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=29.9595141700405, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=33.7349397590361, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=32.5490196078431, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=32, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=31.3432835820896, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI17560150, Length=272, Percent_Identity=30.8823529411765, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=30.188679245283, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=30.7984790874525, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=30.4182509505703, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=31.9702602230483, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=30.4182509505703, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=32.2097378277154, Blast_Score=99, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17555706, Length=257, Percent_Identity=31.5175097276265, Blast_Score=98, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=31.1787072243346, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=29.6992481203008, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=28.2352941176471, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=29.4339622641509, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17536025, Length=264, Percent_Identity=28.030303030303, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17538182, Length=264, Percent_Identity=28.7878787878788, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71982365, Length=221, Percent_Identity=28.5067873303167, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=28.1368821292776, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17538486, Length=274, Percent_Identity=29.1970802919708, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=26.6129032258064, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17536651, Length=267, Percent_Identity=27.7153558052434, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17508895, Length=245, Percent_Identity=26.530612244898, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17564282, Length=192, Percent_Identity=28.125, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193203117, Length=188, Percent_Identity=28.7234042553192, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193203115, Length=262, Percent_Identity=27.0992366412214, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17561272, Length=263, Percent_Identity=28.1368821292776, Blast_Score=66, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=30.3030303030303, Blast_Score=76, Evalue=7e-15, Organism=Saccharomyces cerevisiae, GI6322861, Length=257, Percent_Identity=27.2373540856031, Blast_Score=73, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6322226, Length=191, Percent_Identity=27.7486910994764, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=35.7429718875502, Blast_Score=120, Evalue=9e-28, Organism=Drosophila melanogaster, GI21357041, Length=244, Percent_Identity=33.1967213114754, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=32.9317269076305, Blast_Score=112, Evalue=4e-25, Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=30.952380952381, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI28571526, Length=244, Percent_Identity=32.7868852459016, Blast_Score=108, Evalue=5e-24, Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=32.6771653543307, Blast_Score=101, Evalue=6e-22, Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=31.0204081632653, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI17737361, Length=260, Percent_Identity=29.6153846153846, Blast_Score=92, Evalue=5e-19, Organism=Drosophila melanogaster, GI24644337, Length=261, Percent_Identity=32.9501915708812, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI21357673, Length=198, Percent_Identity=30.3030303030303, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI161076933, Length=194, Percent_Identity=30.9278350515464, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24584748, Length=194, Percent_Identity=30.9278350515464, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI24584744, Length=195, Percent_Identity=30.2564102564103, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI28574402, Length=195, Percent_Identity=30.2564102564103, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21358495, Length=199, Percent_Identity=30.1507537688442, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 32043; Mature: 31911
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGSKNQYEMQNPLTQFPQPQFPHQTQQAPGTIHELQPKADHGEHSYKGFGRLQGRKALI CCCCCCCHHHHCCHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHCCCCEEEE TGADSGIGRATAIAFAREGADIVLNYLPEEEQDAAEVVQLIQAEGRKATSVPGDLKNEAF ECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH CTELVDRAVKELGGLDVLVNIAGKQTAVKDIADITTEQFDATYKTNVYAMFWLCKAAIPH HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCC LPPGASIINTGSIQSYQPSPTLLDYASTKAAIVNFTKGLAQQVAEKGIRVNAVAPGPVWT CCCCCCEEECCCCCCCCCCCCEEHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC PLQPSGGQPPEKIPDFGSETPLKRAGQPVEMAPLYVILASQESSYVTGEVFGATGGLLLS CCCCCCCCCHHHCCCCCCCCCHHHCCCCCEECEEEEEEECCCCCEEEEEEECCCCCEECC >Mature Secondary Structure SGSKNQYEMQNPLTQFPQPQFPHQTQQAPGTIHELQPKADHGEHSYKGFGRLQGRKALI CCCCCCHHHHCCHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHCCCCEEEE TGADSGIGRATAIAFAREGADIVLNYLPEEEQDAAEVVQLIQAEGRKATSVPGDLKNEAF ECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH CTELVDRAVKELGGLDVLVNIAGKQTAVKDIADITTEQFDATYKTNVYAMFWLCKAAIPH HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCC LPPGASIINTGSIQSYQPSPTLLDYASTKAAIVNFTKGLAQQVAEKGIRVNAVAPGPVWT CCCCCCEEECCCCCCCCCCCCEEHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC PLQPSGGQPPEKIPDFGSETPLKRAGQPVEMAPLYVILASQESSYVTGEVFGATGGLLLS CCCCCCCCCHHHCCCCCCCCCHHHCCCCCEECEEEEEEECCCCCEEEEEEECCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 8196543 [H]