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The map label for this gene is yfgC [C]

Identifier: 78046629

GI number: 78046629

Start: 1204917

End: 1206623

Strand: Reverse

Name: yfgC [C]

Synonym: XCV1073

Alternate gene names: 78046629

Gene position: 1206623-1204917 (Counterclockwise)

Preceding gene: 78046633

Following gene: 78046628

Centisome position: 23.3

GC content: 67.84

Gene sequence:

>1707_bases
ATGATTCACGCCTCTGCGCCGGGCTGCCTGCATGCTCCGCGCACCACCTGGGAGTTCCACTTGCGCCTGCTACCGCTCGC
CACTGCCCTTACGCTGGCCGTCGCCATGGGCGTGGCACCTGCGCAGGAAAGCCGCCTGCCCGATATCGGTTCGTCGGCCG
GCGAGTTGCTGACCCCGGCCCGCCAGGCCGAATACGGCAGGATGACGCTGGCCGAGTTGCGCAACTACGACTACGTGCTG
GACGACCCGCTGATCACCGACTGGCTGCAGACCATGGGCACCCGGCTGGGCGCCAACAGCGACCAACCGCAGCAGCCGTT
TACGTTTTTCATGCTGCGCGACCGCCAGATCAATGCATTCGCCACGCTGGGCGGCTACATCGCCGTCAATGCCGGGCTGG
TGTTGACCGCCGAGCGCGAGGACGAAGTGGCGGCGGTGCTGTCGCACGAAATCGCCCACGTCACCCAGCAGCACGTGCTA
CGTGGAGTGGAGCGAGCGCAGCGCGACCAGATTCCGATCCTGCTCGGCATGCTGGCGGCGGTGGTGGCAGCGCAGCAGGC
CGGTGGCAATTCCAAGGGCGACGCCACCATGGCCACCATCACCAGCGCAATGGGGCTGATGCAGCAGCGCCAGATCGACT
ACACCCGCTCCAACGAATCCGAAGCCGACCGGCTGGGCATCCGCACGTTGGCGCGCAGCGGCTACGACGTGGATGCGATG
GCCGGCTTCTTCGAGCGCATGTCGGTGGCGATGCGCGCCAACGAGGGCGGCTACAGCGCGCCGGATTTCCTGCAGACCCA
TCCGGTGACCGTCACCCGCATCAGCGAGGCCAAGTCGCGCGCCGAACAGATGAAGAAGAACACCGTGGTGCTGACCACCT
CGGTGCCGGGCGGGACGCGCCAGGAGCGCGTAGACCCGGCCGACCCGTCGCTGTCGGAGCCGCTCAGTCGCAATGGCAAC
GCGCTGCTCCCTTACGCGCTGCGGTTGCCGGTGGATGCGCTCAGCCGCGGCGGCGACCAGCAGGGTTTCGATTGGGCCAA
GGAACGCCTGCGTGTGCTCAGCGCAGCCACGCCGGATGCGGCCATTCGCGAGTACGAAAACCTGCGCCGCAGCGCCAAAC
AAGGCTTGAGCGATCCGCAGCGCTATGGCCTGGCGCTGGCGCGGCTGCGCAACAGCGGCGGGCGGCCGGGCGAGCCGATG
GCCGAGCTGACCAGCCTGCTCGAGGCGCATCCGGACAATGTGTGGCTGGCGCTGGGCCTGAGCGAGGCGCAGGCGCGCGT
GGGTCCGCGCGAGGCGGCCAATGCCCGCTTCGATGCGCTGCTCAAGCAATTGCCGAACAACCGCGCGGTTGCGCTGACCT
ATGCCACTGCGCTCAACGAGCAGGCCAGCAAGGAATCCGGCCAGCGCGCGCGCCAGGTGCTGGAACCGTTGTTGCACCGG
AGCAGCGACGACCCATTGCTGCAACAGAGCTACGCGCGGGCCTGCGAGCTGTCCGGCGACCCATTGCGCGCCAGCGAAGC
GTATGCGGAGGCGGCGTTCTTGAACGGCCGCGCCGAACAGGCCCTGATCCAGCTGGAAGCACTGAAGAAGAAAGATCTCG
ACTATGTGACACGGGCGCGCGTGGATGCGCGCATCGCCGCGATCACCCCAACCGTGCTGGAGTTGCGTCGCCAGGGGATC
CGCGACCCGGATTTGTCCACGCGCTGA

Upstream 100 bases:

>100_bases
TCTTGGCTCACGGGAAACTCCGTGGTTGGTGTGAGGTCTGACACATGGTACCGGGCGACTGGAATTTCCATGTCGTCACC
GCAACACTGTGGGTTAACCG

Downstream 100 bases:

>100_bases
TCGCCGATGCATTGCCGGCTGTTCACGACGACAGGGCATCGCGCGGCCGCCTCCCGGTAACGGAACTGCCCAGTCCGCTT
CACGCCCCTGTTTCGCCACG

Product: putative Zn-dependent protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 568; Mature: 568

Protein sequence:

>568_residues
MIHASAPGCLHAPRTTWEFHLRLLPLATALTLAVAMGVAPAQESRLPDIGSSAGELLTPARQAEYGRMTLAELRNYDYVL
DDPLITDWLQTMGTRLGANSDQPQQPFTFFMLRDRQINAFATLGGYIAVNAGLVLTAEREDEVAAVLSHEIAHVTQQHVL
RGVERAQRDQIPILLGMLAAVVAAQQAGGNSKGDATMATITSAMGLMQQRQIDYTRSNESEADRLGIRTLARSGYDVDAM
AGFFERMSVAMRANEGGYSAPDFLQTHPVTVTRISEAKSRAEQMKKNTVVLTTSVPGGTRQERVDPADPSLSEPLSRNGN
ALLPYALRLPVDALSRGGDQQGFDWAKERLRVLSAATPDAAIREYENLRRSAKQGLSDPQRYGLALARLRNSGGRPGEPM
AELTSLLEAHPDNVWLALGLSEAQARVGPREAANARFDALLKQLPNNRAVALTYATALNEQASKESGQRARQVLEPLLHR
SSDDPLLQQSYARACELSGDPLRASEAYAEAAFLNGRAEQALIQLEALKKKDLDYVTRARVDARIAAITPTVLELRRQGI
RDPDLSTR

Sequences:

>Translated_568_residues
MIHASAPGCLHAPRTTWEFHLRLLPLATALTLAVAMGVAPAQESRLPDIGSSAGELLTPARQAEYGRMTLAELRNYDYVL
DDPLITDWLQTMGTRLGANSDQPQQPFTFFMLRDRQINAFATLGGYIAVNAGLVLTAEREDEVAAVLSHEIAHVTQQHVL
RGVERAQRDQIPILLGMLAAVVAAQQAGGNSKGDATMATITSAMGLMQQRQIDYTRSNESEADRLGIRTLARSGYDVDAM
AGFFERMSVAMRANEGGYSAPDFLQTHPVTVTRISEAKSRAEQMKKNTVVLTTSVPGGTRQERVDPADPSLSEPLSRNGN
ALLPYALRLPVDALSRGGDQQGFDWAKERLRVLSAATPDAAIREYENLRRSAKQGLSDPQRYGLALARLRNSGGRPGEPM
AELTSLLEAHPDNVWLALGLSEAQARVGPREAANARFDALLKQLPNNRAVALTYATALNEQASKESGQRARQVLEPLLHR
SSDDPLLQQSYARACELSGDPLRASEAYAEAAFLNGRAEQALIQLEALKKKDLDYVTRARVDARIAAITPTVLELRRQGI
RDPDLSTR
>Mature_568_residues
MIHASAPGCLHAPRTTWEFHLRLLPLATALTLAVAMGVAPAQESRLPDIGSSAGELLTPARQAEYGRMTLAELRNYDYVL
DDPLITDWLQTMGTRLGANSDQPQQPFTFFMLRDRQINAFATLGGYIAVNAGLVLTAEREDEVAAVLSHEIAHVTQQHVL
RGVERAQRDQIPILLGMLAAVVAAQQAGGNSKGDATMATITSAMGLMQQRQIDYTRSNESEADRLGIRTLARSGYDVDAM
AGFFERMSVAMRANEGGYSAPDFLQTHPVTVTRISEAKSRAEQMKKNTVVLTTSVPGGTRQERVDPADPSLSEPLSRNGN
ALLPYALRLPVDALSRGGDQQGFDWAKERLRVLSAATPDAAIREYENLRRSAKQGLSDPQRYGLALARLRNSGGRPGEPM
AELTSLLEAHPDNVWLALGLSEAQARVGPREAANARFDALLKQLPNNRAVALTYATALNEQASKESGQRARQVLEPLLHR
SSDDPLLQQSYARACELSGDPLRASEAYAEAAFLNGRAEQALIQLEALKKKDLDYVTRARVDARIAAITPTVLELRRQGI
RDPDLSTR

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=270, Percent_Identity=34.8148148148148, Blast_Score=169, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 61972; Mature: 61972

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHASAPGCLHAPRTTWEFHLRLLPLATALTLAVAMGVAPAQESRLPDIGSSAGELLTPA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHCCCH
RQAEYGRMTLAELRNYDYVLDDPLITDWLQTMGTRLGANSDQPQQPFTFFMLRDRQINAF
HHHHHCCHHHHHHCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHH
ATLGGYIAVNAGLVLTAEREDEVAAVLSHEIAHVTQQHVLRGVERAQRDQIPILLGMLAA
HHHCCEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VVAAQQAGGNSKGDATMATITSAMGLMQQRQIDYTRSNESEADRLGIRTLARSGYDVDAM
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHH
AGFFERMSVAMRANEGGYSAPDFLQTHPVTVTRISEAKSRAEQMKKNTVVLTTSVPGGTR
HHHHHHHHHHHCCCCCCCCCCCHHCCCCEEEEHHHHHHHHHHHHHCCEEEEEECCCCCCC
QERVDPADPSLSEPLSRNGNALLPYALRLPVDALSRGGDQQGFDWAKERLRVLSAATPDA
CCCCCCCCCCCCCHHHCCCCEEECHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCHH
AIREYENLRRSAKQGLSDPQRYGLALARLRNSGGRPGEPMAELTSLLEAHPDNVWLALGL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEC
SEAQARVGPREAANARFDALLKQLPNNRAVALTYATALNEQASKESGQRARQVLEPLLHR
HHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC
SSDDPLLQQSYARACELSGDPLRASEAYAEAAFLNGRAEQALIQLEALKKKDLDYVTRAR
CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHH
VDARIAAITPTVLELRRQGIRDPDLSTR
HHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MIHASAPGCLHAPRTTWEFHLRLLPLATALTLAVAMGVAPAQESRLPDIGSSAGELLTPA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHCCCH
RQAEYGRMTLAELRNYDYVLDDPLITDWLQTMGTRLGANSDQPQQPFTFFMLRDRQINAF
HHHHHCCHHHHHHCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHH
ATLGGYIAVNAGLVLTAEREDEVAAVLSHEIAHVTQQHVLRGVERAQRDQIPILLGMLAA
HHHCCEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VVAAQQAGGNSKGDATMATITSAMGLMQQRQIDYTRSNESEADRLGIRTLARSGYDVDAM
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHH
AGFFERMSVAMRANEGGYSAPDFLQTHPVTVTRISEAKSRAEQMKKNTVVLTTSVPGGTR
HHHHHHHHHHHCCCCCCCCCCCHHCCCCEEEEHHHHHHHHHHHHHCCEEEEEECCCCCCC
QERVDPADPSLSEPLSRNGNALLPYALRLPVDALSRGGDQQGFDWAKERLRVLSAATPDA
CCCCCCCCCCCCCHHHCCCCEEECHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCHH
AIREYENLRRSAKQGLSDPQRYGLALARLRNSGGRPGEPMAELTSLLEAHPDNVWLALGL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEC
SEAQARVGPREAANARFDALLKQLPNNRAVALTYATALNEQASKESGQRARQVLEPLLHR
HHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC
SSDDPLLQQSYARACELSGDPLRASEAYAEAAFLNGRAEQALIQLEALKKKDLDYVTRAR
CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHH
VDARIAAITPTVLELRRQGIRDPDLSTR
HHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]