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The map label for this gene is ybaK [H]

Identifier: 78046518

GI number: 78046518

Start: 1094162

End: 1094635

Strand: Reverse

Name: ybaK [H]

Synonym: XCV0962

Alternate gene names: 78046518

Gene position: 1094635-1094162 (Counterclockwise)

Preceding gene: 78046519

Following gene: 78046512

Centisome position: 21.14

GC content: 66.03

Gene sequence:

>474_bases
ATGAGCAAGGCCACCCGCGCCACCAAGGCACTGGACGCGGCCGGCGTGGGTTATGTGCTGCATCCTTACGACTATCAGGC
CGATGCCGATGCGAAGGGATTGCAGGCCGCACATGCGTTGGGCCTGCCGCCGCATGCCGTGTTGAAGACACTGATGGCAT
GGGTTGACGACAAGGCGGTGTGCGTGGTGATTCCATGCGACCGCCGGGTGTCGTTGAAAAAACTGGCCAGCGCCTACGGT
GGCAAGTCGGCACGCATGATGGACGTGGCCGATGCCGAACGGCGCACCGGCTACAAGGTCGGCGGTATCAGCCCGCTCGG
CCAGCAACGGCAGGCGCCGGTGCTGGTCGAAATCACCGCGCTGGACGCACCGGCGCTATGGATCAACGCCGGCCAGCGCG
GGCTGCTGCTGGAATTGCCCGGCACCCAGCTGGTGCATGCACTCGCCGCACGCGCTTGCGCGCTGTGCGAGTGA

Upstream 100 bases:

>100_bases
CTGCCGTCGGGTGTTTATATCGCCATGAACGGCCGCATCTGGAATCCGCAAAAAGTGCGCAAGAACGTGGCCGCCAACCG
CTTCGAATCGGTCTGAGTGC

Downstream 100 bases:

>100_bases
ACGCGTAGACGCAATGCGCGCATGCCGGTTGGCATGCGCGTGACGCGTTTGGGACTTAACTCACGCGATGCCTCTCGACG
GACCGCCTGCGTATCTCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSKATRATKALDAAGVGYVLHPYDYQADADAKGLQAAHALGLPPHAVLKTLMAWVDDKAVCVVIPCDRRVSLKKLASAYG
GKSARMMDVADAERRTGYKVGGISPLGQQRQAPVLVEITALDAPALWINAGQRGLLLELPGTQLVHALAARACALCE

Sequences:

>Translated_157_residues
MSKATRATKALDAAGVGYVLHPYDYQADADAKGLQAAHALGLPPHAVLKTLMAWVDDKAVCVVIPCDRRVSLKKLASAYG
GKSARMMDVADAERRTGYKVGGISPLGQQRQAPVLVEITALDAPALWINAGQRGLLLELPGTQLVHALAARACALCE
>Mature_156_residues
SKATRATKALDAAGVGYVLHPYDYQADADAKGLQAAHALGLPPHAVLKTLMAWVDDKAVCVVIPCDRRVSLKKLASAYGG
KSARMMDVADAERRTGYKVGGISPLGQQRQAPVLVEITALDAPALWINAGQRGLLLELPGTQLVHALAARACALCE

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=150, Percent_Identity=36.6666666666667, Blast_Score=91, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16556; Mature: 16425

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKATRATKALDAAGVGYVLHPYDYQADADAKGLQAAHALGLPPHAVLKTLMAWVDDKAV
CCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCE
CVVIPCDRRVSLKKLASAYGGKSARMMDVADAERRTGYKVGGISPLGQQRQAPVLVEITA
EEEECCCCCCHHHHHHHHHCCCCCEEEECCCHHHHCCEECCCCCCCCCCCCCCEEEEEEE
LDAPALWINAGQRGLLLELPGTQLVHALAARACALCE
CCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKATRATKALDAAGVGYVLHPYDYQADADAKGLQAAHALGLPPHAVLKTLMAWVDDKAV
CCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCE
CVVIPCDRRVSLKKLASAYGGKSARMMDVADAERRTGYKVGGISPLGQQRQAPVLVEITA
EEEECCCCCCHHHHHHHHHCCCCCEEEECCCHHHHCCEECCCCCCCCCCCCCCEEEEEEE
LDAPALWINAGQRGLLLELPGTQLVHALAARACALCE
CCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]