| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
Click here to switch to the map view.
The map label for this gene is ybbP [H]
Identifier: 78046440
GI number: 78046440
Start: 1014050
End: 1016533
Strand: Reverse
Name: ybbP [H]
Synonym: XCV0884
Alternate gene names: 78046440
Gene position: 1016533-1014050 (Counterclockwise)
Preceding gene: 78046441
Following gene: 78046439
Centisome position: 19.63
GC content: 68.96
Gene sequence:
>2484_bases ATGAACGTCGTGCGCCAAGCCGCGCGCGCCGTGCGCCGCGAATTCCTGGCCGGCGATCTGCTGACGGTGTTCGCCGCGCT GGTGCTGGGCGTGGCGGTGATGACCGCGGTGGGCACCCTGGTCGACCGGGTGACGCTCGCGCTGACCTCCAGCGCGGCCG AAGTGCTCGGCGGCGATCTGGGCGTGACCGGGCGGCAGGAGATCCCGGCCGACTTCGCCGCAGAAGCCCAGCGACGCGGC CTGCAGAGCACGCGCATGGTCAGCTTTCCCAGCGTGCTGTTCCATGGCGATGCCAGCCAGATGGCCAATATCCGCGGCGT TGGCCCCGGCTACCCGCTGCGCGGGCAGTTGCTGGTGTCCAAGGACGGCACCGGGACGGAAGGCAGCGCCGCCAGCGCAC CGCCGCCGGGCCAGGCCTATGCCGATCCGCGCCTGCTCGAAGCGCTGGGCCTGCACGTGGGCGAGCAACTGGAATTCGGT GCCGGCCATCTGACCATCACCGGCGTGTTGCGCGCCGAGCCCGATGCCTCCGGGGAGCTGATGCAGCTCTCGCCGCCGCT GCTGGTCAATCGCGCCGATATCGACGGCGCCGGCCTGCTCGGCCCAGGCAGCCGCGCCTCCTATCGGTTGATGTTCGCCG GCGCACCGGATGCCATCGCCGATTTGCGCGCCTGGCTCAAGCCACGCGCCAGCGAGTATCGCCTGGTGGGTATTGAAGAC ACCCAACGCGGCATGCGTGCGGCGTTTGATCGCGCCGGCCGCTTCCTGGCCTTGTCGGCGTTGCTGGCGGTGCTGTTGTC CGGCGTGGCCACGGCCCTGGCAGCGAACCGGTTTGCGATGCGACGCATCGACACCGTGGCGGTCTTGCGCTGCCTGGGCG CACGCCAGCGCGACATCCTGGCAATGCTGTCGCTGCAGTTGCTGCTGACGGCGATTCCGGCCTGCCTGGTCGGTATCGGG CTTGGCATGCTTGCGCAGGAAGGCCTGGTGCAGGCGCTGGGCAGCCTGATCCCGAACCGGTTGCCGCTGCCGCAGGCCAC CCCTGCCCTGGCCGGTGCGGGCATCGGCCTGGTGCTGTTGCTGGGCTTCGGCCTGCCGCCGCTGCTGCGGCTGCGCAACG TGCCACCGATGCGCGTGCTCAACCGCAGCTTTGCTGCAGTGCCACCGAGTTCGTTGCTGGTGTATGGCGCCGCCCTGGCC GCCACGCTGGCGCTCACCGTCTATGCCACCGGCAACCTGGTATTGGCCGGCTGGGTGCTGGGCGGCCTGGCCGCGCTGGC ACTGGTGGCGATGTTGCTGGGGCTGGGCCTGCTCGCGTTGCTGCGACCGATCCAGCACCGTCTGCGCGGTGCCTGGAAAC TTGGCCTGGCCTCGCTGACACGGCGCCGCGGCTTGAGCGTGGTGCAACTGGTCGGGCTGTCGCTGTCGTTGTGCGCGCTG TTGCTGCTGGCGGTGGTCGGCCCGGGCCTGCTCGGTCAATGGCGCGACCGCCTGCCGGCCGATACGCCCAACTACTTCCT GATGAACATCCAGCCCGAACAAACCCAGCCGGTGCTGCAGACGCTGCGCGGCCTGGGGGTGAATGATGCGGCCGTGGAGC CGTTTTCCACCGGGCGCCTGGTGGCCATCAACGAAAAACCGCCGGTGCGTGGCGACCGCGACCCGGCCGACGATGGCGAC GGCGACAACCGCCCGGTGAATTTTTCCTGGCGTCACGCGTTCCCGCCGGCAAATACGCTGCTGCAGGGCAAGTTCTGGGC GGCCGACAGCACCGCGGCGGAAGCCTCGGTGGAAGAAGGCTGGGCGCAGCGCTACCAGCTCAAACTGGGCGATCGCATCA CCCTGCTGCTGGGCGAACAGCAACGCACGTTCACCGTGACCAGCATCCGCAAGGCCGATTGGGATTCGTTCCGGGTCAAC TTCTTCCTGCTGCTCAATCAAGGATCGGTCGGCGATGCGCCGTACAACCTGATTTCCGCCTTCCACCTGCCGCCGGGCAA TGCGTCCAAGCTGGCGGCGCTGAGTCGCGACTATCCGAACATTTCGTTGCTGGATATCGATGCCATCCTGGGCCGCGTGC GCGAGGTCATCGACCAGGTGGCACAGGCGGTGCAACTGGTGATGGGCTTCAGCCTGCTGGCCGGCGTGCTGGTGTTGCTG GCCGCATTGCAGGCCACCGCGGGCGAACGCCGTTACGACAGCGCAGTGTTGCGCACCCTGGGCGCACGCCGTGGCCAGCT ACGCGGTGCGGTGCTGGTGGAATTCGGCGCGCTTGGCTTGCTGGCGGCGACGCTGGCGGTGACCGCTGCGGCCGTGATCG GCGCGGTCGTGGGGAAGCAGGCGTTCGAGATGGCGTTGACACCGGATTGGCCGCGCCTGCTGCTCGGCGGCGCATTCGGG CTGGCCTTGAGTCTGTTGGCGGGTTGGTCGGGCACGCGGCGCATCCTGTCCACGCCGCCGGCATTGGCATTGCGGAGCGA ATAA
Upstream 100 bases:
>100_bases CCCTGGTGCTGGTCACACACGACATGAGCCTGGCGCAGCGCTGCAGGCACATCTACCGCATCGACAGCGGCCGCCTGCAC GCACAGACCGGTCCGGCGGC
Downstream 100 bases:
>100_bases GCGCGGGTAAAACGCGTCGCATGCGGGCAACGGCATGCGACGCGCGGCCCGGTGGCTGTGCTGCAGGCCAGCTCACGGAC GCTGTGGCGCGCAGCGTGAG
Product: ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 827; Mature: 827
Protein sequence:
>827_residues MNVVRQAARAVRREFLAGDLLTVFAALVLGVAVMTAVGTLVDRVTLALTSSAAEVLGGDLGVTGRQEIPADFAAEAQRRG LQSTRMVSFPSVLFHGDASQMANIRGVGPGYPLRGQLLVSKDGTGTEGSAASAPPPGQAYADPRLLEALGLHVGEQLEFG AGHLTITGVLRAEPDASGELMQLSPPLLVNRADIDGAGLLGPGSRASYRLMFAGAPDAIADLRAWLKPRASEYRLVGIED TQRGMRAAFDRAGRFLALSALLAVLLSGVATALAANRFAMRRIDTVAVLRCLGARQRDILAMLSLQLLLTAIPACLVGIG LGMLAQEGLVQALGSLIPNRLPLPQATPALAGAGIGLVLLLGFGLPPLLRLRNVPPMRVLNRSFAAVPPSSLLVYGAALA ATLALTVYATGNLVLAGWVLGGLAALALVAMLLGLGLLALLRPIQHRLRGAWKLGLASLTRRRGLSVVQLVGLSLSLCAL LLLAVVGPGLLGQWRDRLPADTPNYFLMNIQPEQTQPVLQTLRGLGVNDAAVEPFSTGRLVAINEKPPVRGDRDPADDGD GDNRPVNFSWRHAFPPANTLLQGKFWAADSTAAEASVEEGWAQRYQLKLGDRITLLLGEQQRTFTVTSIRKADWDSFRVN FFLLLNQGSVGDAPYNLISAFHLPPGNASKLAALSRDYPNISLLDIDAILGRVREVIDQVAQAVQLVMGFSLLAGVLVLL AALQATAGERRYDSAVLRTLGARRGQLRGAVLVEFGALGLLAATLAVTAAAVIGAVVGKQAFEMALTPDWPRLLLGGAFG LALSLLAGWSGTRRILSTPPALALRSE
Sequences:
>Translated_827_residues MNVVRQAARAVRREFLAGDLLTVFAALVLGVAVMTAVGTLVDRVTLALTSSAAEVLGGDLGVTGRQEIPADFAAEAQRRG LQSTRMVSFPSVLFHGDASQMANIRGVGPGYPLRGQLLVSKDGTGTEGSAASAPPPGQAYADPRLLEALGLHVGEQLEFG AGHLTITGVLRAEPDASGELMQLSPPLLVNRADIDGAGLLGPGSRASYRLMFAGAPDAIADLRAWLKPRASEYRLVGIED TQRGMRAAFDRAGRFLALSALLAVLLSGVATALAANRFAMRRIDTVAVLRCLGARQRDILAMLSLQLLLTAIPACLVGIG LGMLAQEGLVQALGSLIPNRLPLPQATPALAGAGIGLVLLLGFGLPPLLRLRNVPPMRVLNRSFAAVPPSSLLVYGAALA ATLALTVYATGNLVLAGWVLGGLAALALVAMLLGLGLLALLRPIQHRLRGAWKLGLASLTRRRGLSVVQLVGLSLSLCAL LLLAVVGPGLLGQWRDRLPADTPNYFLMNIQPEQTQPVLQTLRGLGVNDAAVEPFSTGRLVAINEKPPVRGDRDPADDGD GDNRPVNFSWRHAFPPANTLLQGKFWAADSTAAEASVEEGWAQRYQLKLGDRITLLLGEQQRTFTVTSIRKADWDSFRVN FFLLLNQGSVGDAPYNLISAFHLPPGNASKLAALSRDYPNISLLDIDAILGRVREVIDQVAQAVQLVMGFSLLAGVLVLL AALQATAGERRYDSAVLRTLGARRGQLRGAVLVEFGALGLLAATLAVTAAAVIGAVVGKQAFEMALTPDWPRLLLGGAFG LALSLLAGWSGTRRILSTPPALALRSE >Mature_827_residues MNVVRQAARAVRREFLAGDLLTVFAALVLGVAVMTAVGTLVDRVTLALTSSAAEVLGGDLGVTGRQEIPADFAAEAQRRG LQSTRMVSFPSVLFHGDASQMANIRGVGPGYPLRGQLLVSKDGTGTEGSAASAPPPGQAYADPRLLEALGLHVGEQLEFG AGHLTITGVLRAEPDASGELMQLSPPLLVNRADIDGAGLLGPGSRASYRLMFAGAPDAIADLRAWLKPRASEYRLVGIED TQRGMRAAFDRAGRFLALSALLAVLLSGVATALAANRFAMRRIDTVAVLRCLGARQRDILAMLSLQLLLTAIPACLVGIG LGMLAQEGLVQALGSLIPNRLPLPQATPALAGAGIGLVLLLGFGLPPLLRLRNVPPMRVLNRSFAAVPPSSLLVYGAALA ATLALTVYATGNLVLAGWVLGGLAALALVAMLLGLGLLALLRPIQHRLRGAWKLGLASLTRRRGLSVVQLVGLSLSLCAL LLLAVVGPGLLGQWRDRLPADTPNYFLMNIQPEQTQPVLQTLRGLGVNDAAVEPFSTGRLVAINEKPPVRGDRDPADDGD GDNRPVNFSWRHAFPPANTLLQGKFWAADSTAAEASVEEGWAQRYQLKLGDRITLLLGEQQRTFTVTSIRKADWDSFRVN FFLLLNQGSVGDAPYNLISAFHLPPGNASKLAALSRDYPNISLLDIDAILGRVREVIDQVAQAVQLVMGFSLLAGVLVLL AALQATAGERRYDSAVLRTLGARRGQLRGAVLVEFGALGLLAATLAVTAAAVIGAVVGKQAFEMALTPDWPRLLLGGAFG LALSLLAGWSGTRRILSTPPALALRSE
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=811, Percent_Identity=33.5388409371147, Blast_Score=369, Evalue=1e-103,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 87071; Mature: 87071
Theoretical pI: Translated: 10.37; Mature: 10.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVVRQAARAVRREFLAGDLLTVFAALVLGVAVMTAVGTLVDRVTLALTSSAAEVLGGDL CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GVTGRQEIPADFAAEAQRRGLQSTRMVSFPSVLFHGDASQMANIRGVGPGYPLRGQLLVS CCCCCCCCCHHHHHHHHHCCCCHHHHCCCCHHEEECCHHHHCCCCCCCCCCCCCCEEEEE KDGTGTEGSAASAPPPGQAYADPRLLEALGLHVGEQLEFGAGHLTITGVLRAEPDASGEL CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCE MQLSPPLLVNRADIDGAGLLGPGSRASYRLMFAGAPDAIADLRAWLKPRASEYRLVGIED EECCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCH TQRGMRAAFDRAGRFLALSALLAVLLSGVATALAANRFAMRRIDTVAVLRCLGARQRDIL HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH AMLSLQLLLTAIPACLVGIGLGMLAQEGLVQALGSLIPNRLPLPQATPALAGAGIGLVLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHH LGFGLPPLLRLRNVPPMRVLNRSFAAVPPSSLLVYGAALAATLALTVYATGNLVLAGWVL HHCCCCHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCHHHHHHH GGLAALALVAMLLGLGLLALLRPIQHRLRGAWKLGLASLTRRRGLSVVQLVGLSLSLCAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LLLAVVGPGLLGQWRDRLPADTPNYFLMNIQPEQTQPVLQTLRGLGVNDAAVEPFSTGRL HHHHHHCCCHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE VAINEKPPVRGDRDPADDGDGDNRPVNFSWRHAFPPANTLLQGKFWAADSTAAEASVEEG EEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCEECCCCHHHHHHHHHH WAQRYQLKLGDRITLLLGEQQRTFTVTSIRKADWDSFRVNFFLLLNQGSVGDAPYNLISA HHHHHHHHCCCEEEEEECCCCCEEEEEEHHHCCCCCEEEEEEEEEECCCCCCCCHHHHHH FHLPPGNASKLAALSRDYPNISLLDIDAILGRVREVIDQVAQAVQLVMGFSLLAGVLVLL CCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALQATAGERRYDSAVLRTLGARRGQLRGAVLVEFGALGLLAATLAVTAAAVIGAVVGKQ HHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFEMALTPDWPRLLLGGAFGLALSLLAGWSGTRRILSTPPALALRSE HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC >Mature Secondary Structure MNVVRQAARAVRREFLAGDLLTVFAALVLGVAVMTAVGTLVDRVTLALTSSAAEVLGGDL CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GVTGRQEIPADFAAEAQRRGLQSTRMVSFPSVLFHGDASQMANIRGVGPGYPLRGQLLVS CCCCCCCCCHHHHHHHHHCCCCHHHHCCCCHHEEECCHHHHCCCCCCCCCCCCCCEEEEE KDGTGTEGSAASAPPPGQAYADPRLLEALGLHVGEQLEFGAGHLTITGVLRAEPDASGEL CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCE MQLSPPLLVNRADIDGAGLLGPGSRASYRLMFAGAPDAIADLRAWLKPRASEYRLVGIED EECCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCH TQRGMRAAFDRAGRFLALSALLAVLLSGVATALAANRFAMRRIDTVAVLRCLGARQRDIL HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH AMLSLQLLLTAIPACLVGIGLGMLAQEGLVQALGSLIPNRLPLPQATPALAGAGIGLVLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHH LGFGLPPLLRLRNVPPMRVLNRSFAAVPPSSLLVYGAALAATLALTVYATGNLVLAGWVL HHCCCCHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCHHHHHHH GGLAALALVAMLLGLGLLALLRPIQHRLRGAWKLGLASLTRRRGLSVVQLVGLSLSLCAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LLLAVVGPGLLGQWRDRLPADTPNYFLMNIQPEQTQPVLQTLRGLGVNDAAVEPFSTGRL HHHHHHCCCHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE VAINEKPPVRGDRDPADDGDGDNRPVNFSWRHAFPPANTLLQGKFWAADSTAAEASVEEG EEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCEECCCCHHHHHHHHHH WAQRYQLKLGDRITLLLGEQQRTFTVTSIRKADWDSFRVNFFLLLNQGSVGDAPYNLISA HHHHHHHHCCCEEEEEECCCCCEEEEEEHHHCCCCCEEEEEEEEEECCCCCCCCHHHHHH FHLPPGNASKLAALSRDYPNISLLDIDAILGRVREVIDQVAQAVQLVMGFSLLAGVLVLL CCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALQATAGERRYDSAVLRTLGARRGQLRGAVLVEFGALGLLAATLAVTAAAVIGAVVGKQ HHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFEMALTPDWPRLLLGGAFGLALSLLAGWSGTRRILSTPPALALRSE HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]