| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is yjjK [H]
Identifier: 78046348
GI number: 78046348
Start: 904199
End: 905860
Strand: Reverse
Name: yjjK [H]
Synonym: XCV0792
Alternate gene names: 78046348
Gene position: 905860-904199 (Counterclockwise)
Preceding gene: 78046355
Following gene: 78046347
Centisome position: 17.49
GC content: 63.3
Gene sequence:
>1662_bases ATGTCGCAATACATCTACACCATGAACCGCGTCAGCAAGGTGGTCCCGCCCAAGCGGCAGATCATCAAGGACATCTCGCT GAGCTTCTTCCCGGGCGCCAAGATCGGCCTGCTGGGCCTGAACGGCGCGGGCAAGTCCACCGTACTGAAGATCATGGCCG GCGTGGACACCGATTTCGAAGGCGAGGCACGCCCACAACCGGGCATCAAGGTCGGCTACCTGGCGCAGGAACCGCAGCTC AATCCCGAGCACACCGTGCGCGAGGCGGTGGAAGAAGGCGTGGGCGACGTGCTGCAGGCCCAGGCCGCGCTGGATGCGGT GTATCTGGCCTATGCCGAAGAAGGCGCCGATTTCGACGCGCTGGCCAAGGAGCAGGAGCGCCTGGAGGCGATCCTGGCCG CCGCCGATGCGCATACGCTGGAAAACCAGCTGGACGTGGCGGCCGATGCGCTGCGCCTGCCGCCGTGGGACGCCATCGTC GGCAAGCTCTCCGGCGGCGAAAAGCGTCGCGTGGCGCTGTGCCGCCTGCTGCTGCAGAAGCCGGACATGCTGCTGCTCGA CGAACCCACCAACCACCTGGACGCCGAGTCGGTGGAATGGCTGGAGCAGTTCCTGGCGCGCTATACCGGCACCGTGGTGG CGGTAACCCATGATCGCTACTTCCTCGACAACGCCGCCGAGTGGATCCTGGAACTGGACCGTGGCCGCGGCATTCCGTGG AAGGGCAACTACACCGACTGGCTGACCCAGAAGGACGAGCGCCTCAAGCAGGAAGACAACCAGGAAAAGTCCCGCCAGAA GGCGATCCAGAAGGAACTGGAATGGTCGCGCCAGAACGCCAAGGGCGGCCGCACCAAGGGCAAGGCACGTCTGGCCCGCC TGGAAGAGCTGCAATCGGTCGATTACCAGAAGCGCAACGAAACCAACGAGATCTTCATCCCGCCGGGCGAGCGCCTGGGC AACGCGGTGATGGAGTTCAAGAACGTGTCCAAGAAGTTCGGCGACCGCCTGTTGATCGACAACCTGTCGATGATCGTGCC ACCGGGCGCCATCGTCGGCATCATCGGCCCCAACGGTGCCGGTAAGTCGACCCTGTTCAAGATGATCACCGGCCAGGAAA AGCCGGACTCCGGCGAGATCGTGGTCGGACCGACCGTGCAGCTGTCGTACGTGGACCAGAGCCGCGACGCACTGGAGGGC AACCACAACGTATTCCAGGAAATCGCCGGCGGCCTGGACATCCTCAACATCAACGGCATCGAAATCCAGTCGCGCGCCTA CATCGGCCGCTTCAACTTCAAGGGCCAGGACCAGCAGAAGATGGTCGGTTCGCTGTCCGGTGGTGAGCGCGGTCGTCTGC ACATGGCCAAGACCCTACTGCAGGGCGGTAACGTGCTGCTGCTGGACGAACCGTCCAACGACCTGGACATCGAAACCCTG CGTGCGCTGGAAGATGCGTTGCTGGAATTCCCCGGCAACACCTTCGTGATTTCGCATGACCGCTGGTTCCTGGACCGTAT CGCCACGCACATCCTGGCCTTCGAAGGCGATTCGCACGTGGAGTTCTTCCAGGGCAACTACCGCGAGTACGAAGAAGACA AGCGCCGCCGCATGGGCGACGACGCCGGCCCGAAGCGTTTGCGTTTCAAGGCCTTGAAGTAA
Upstream 100 bases:
>100_bases TGCTGCCGCGGCTCAAGCCACTTGCCCGTATAATTGGCGCAACCCCTTTTCCGCTGCCTCCGGCCTCGGCCGGCGGGCTG CCTGCGTCCACGGAGCCCCC
Downstream 100 bases:
>100_bases GTCGTCGGAGTTCCAAAGAAAAGGCGCCGAAAGGCGCCTTTTTTATCAGCGAACGGAGACTTGGCTGTTGGCTGCTGGCG CCGTCCACCTGCGCGTGTGG
Product: putative ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 553; Mature: 552
Protein sequence:
>553_residues MSQYIYTMNRVSKVVPPKRQIIKDISLSFFPGAKIGLLGLNGAGKSTVLKIMAGVDTDFEGEARPQPGIKVGYLAQEPQL NPEHTVREAVEEGVGDVLQAQAALDAVYLAYAEEGADFDALAKEQERLEAILAAADAHTLENQLDVAADALRLPPWDAIV GKLSGGEKRRVALCRLLLQKPDMLLLDEPTNHLDAESVEWLEQFLARYTGTVVAVTHDRYFLDNAAEWILELDRGRGIPW KGNYTDWLTQKDERLKQEDNQEKSRQKAIQKELEWSRQNAKGGRTKGKARLARLEELQSVDYQKRNETNEIFIPPGERLG NAVMEFKNVSKKFGDRLLIDNLSMIVPPGAIVGIIGPNGAGKSTLFKMITGQEKPDSGEIVVGPTVQLSYVDQSRDALEG NHNVFQEIAGGLDILNINGIEIQSRAYIGRFNFKGQDQQKMVGSLSGGERGRLHMAKTLLQGGNVLLLDEPSNDLDIETL RALEDALLEFPGNTFVISHDRWFLDRIATHILAFEGDSHVEFFQGNYREYEEDKRRRMGDDAGPKRLRFKALK
Sequences:
>Translated_553_residues MSQYIYTMNRVSKVVPPKRQIIKDISLSFFPGAKIGLLGLNGAGKSTVLKIMAGVDTDFEGEARPQPGIKVGYLAQEPQL NPEHTVREAVEEGVGDVLQAQAALDAVYLAYAEEGADFDALAKEQERLEAILAAADAHTLENQLDVAADALRLPPWDAIV GKLSGGEKRRVALCRLLLQKPDMLLLDEPTNHLDAESVEWLEQFLARYTGTVVAVTHDRYFLDNAAEWILELDRGRGIPW KGNYTDWLTQKDERLKQEDNQEKSRQKAIQKELEWSRQNAKGGRTKGKARLARLEELQSVDYQKRNETNEIFIPPGERLG NAVMEFKNVSKKFGDRLLIDNLSMIVPPGAIVGIIGPNGAGKSTLFKMITGQEKPDSGEIVVGPTVQLSYVDQSRDALEG NHNVFQEIAGGLDILNINGIEIQSRAYIGRFNFKGQDQQKMVGSLSGGERGRLHMAKTLLQGGNVLLLDEPSNDLDIETL RALEDALLEFPGNTFVISHDRWFLDRIATHILAFEGDSHVEFFQGNYREYEEDKRRRMGDDAGPKRLRFKALK >Mature_552_residues SQYIYTMNRVSKVVPPKRQIIKDISLSFFPGAKIGLLGLNGAGKSTVLKIMAGVDTDFEGEARPQPGIKVGYLAQEPQLN PEHTVREAVEEGVGDVLQAQAALDAVYLAYAEEGADFDALAKEQERLEAILAAADAHTLENQLDVAADALRLPPWDAIVG KLSGGEKRRVALCRLLLQKPDMLLLDEPTNHLDAESVEWLEQFLARYTGTVVAVTHDRYFLDNAAEWILELDRGRGIPWK GNYTDWLTQKDERLKQEDNQEKSRQKAIQKELEWSRQNAKGGRTKGKARLARLEELQSVDYQKRNETNEIFIPPGERLGN AVMEFKNVSKKFGDRLLIDNLSMIVPPGAIVGIIGPNGAGKSTLFKMITGQEKPDSGEIVVGPTVQLSYVDQSRDALEGN HNVFQEIAGGLDILNINGIEIQSRAYIGRFNFKGQDQQKMVGSLSGGERGRLHMAKTLLQGGNVLLLDEPSNDLDIETLR ALEDALLEFPGNTFVISHDRWFLDRIATHILAFEGDSHVEFFQGNYREYEEDKRRRMGDDAGPKRLRFKALK
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=541, Percent_Identity=29.5748613678373, Blast_Score=190, Evalue=3e-48, Organism=Homo sapiens, GI10947137, Length=550, Percent_Identity=29.4545454545455, Blast_Score=179, Evalue=9e-45, Organism=Homo sapiens, GI27881506, Length=550, Percent_Identity=29.4545454545455, Blast_Score=178, Evalue=1e-44, Organism=Homo sapiens, GI69354671, Length=550, Percent_Identity=26.9090909090909, Blast_Score=141, Evalue=2e-33, Organism=Homo sapiens, GI10947135, Length=550, Percent_Identity=26.9090909090909, Blast_Score=140, Evalue=2e-33, Organism=Homo sapiens, GI27477115, Length=161, Percent_Identity=34.7826086956522, Blast_Score=69, Evalue=8e-12, Organism=Homo sapiens, GI47078218, Length=171, Percent_Identity=30.4093567251462, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI45446740, Length=171, Percent_Identity=30.4093567251462, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI2367384, Length=553, Percent_Identity=69.620253164557, Blast_Score=804, Evalue=0.0, Organism=Escherichia coli, GI1787182, Length=520, Percent_Identity=34.6153846153846, Blast_Score=276, Evalue=2e-75, Organism=Escherichia coli, GI1789751, Length=521, Percent_Identity=33.0134357005758, Blast_Score=249, Evalue=2e-67, Organism=Escherichia coli, GI1787041, Length=528, Percent_Identity=29.7348484848485, Blast_Score=223, Evalue=2e-59, Organism=Escherichia coli, GI87081782, Length=578, Percent_Identity=24.5674740484429, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI87081709, Length=192, Percent_Identity=29.1666666666667, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI48994943, Length=477, Percent_Identity=25.3668763102725, Blast_Score=93, Evalue=4e-20, Organism=Escherichia coli, GI1788761, Length=228, Percent_Identity=32.0175438596491, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1786975, Length=386, Percent_Identity=25.9067357512953, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI1788165, Length=187, Percent_Identity=31.5508021390374, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1787029, Length=211, Percent_Identity=30.3317535545024, Blast_Score=76, Evalue=5e-15, Organism=Escherichia coli, GI1789672, Length=219, Percent_Identity=29.6803652968037, Blast_Score=76, Evalue=5e-15, Organism=Escherichia coli, GI87081791, Length=194, Percent_Identity=32.4742268041237, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1787712, Length=195, Percent_Identity=29.2307692307692, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1790467, Length=222, Percent_Identity=29.7297297297297, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1786398, Length=208, Percent_Identity=28.3653846153846, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1788225, Length=211, Percent_Identity=26.5402843601896, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1786345, Length=239, Percent_Identity=31.7991631799163, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1787164, Length=184, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1786703, Length=203, Percent_Identity=30.5418719211823, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1789873, Length=229, Percent_Identity=27.0742358078603, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1788897, Length=207, Percent_Identity=25.1207729468599, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1788450, Length=221, Percent_Identity=29.8642533936652, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1790525, Length=216, Percent_Identity=24.537037037037, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787370, Length=193, Percent_Identity=27.979274611399, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1786253, Length=181, Percent_Identity=31.4917127071823, Blast_Score=63, Evalue=4e-11, Organism=Escherichia coli, GI1786563, Length=190, Percent_Identity=25.7894736842105, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17559834, Length=539, Percent_Identity=27.0871985157699, Blast_Score=179, Evalue=3e-45, Organism=Caenorhabditis elegans, GI17553372, Length=527, Percent_Identity=30.9297912713473, Blast_Score=177, Evalue=9e-45, Organism=Caenorhabditis elegans, GI17555318, Length=553, Percent_Identity=27.3056057866184, Blast_Score=169, Evalue=5e-42, Organism=Caenorhabditis elegans, GI17541710, Length=256, Percent_Identity=29.296875, Blast_Score=73, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193208177, Length=223, Percent_Identity=28.2511210762332, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17569143, Length=271, Percent_Identity=26.9372693726937, Blast_Score=70, Evalue=3e-12, Organism=Caenorhabditis elegans, GI212646699, Length=196, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=514, Percent_Identity=31.5175097276265, Blast_Score=201, Evalue=2e-52, Organism=Saccharomyces cerevisiae, GI6321121, Length=547, Percent_Identity=27.0566727605119, Blast_Score=181, Evalue=2e-46, Organism=Saccharomyces cerevisiae, GI6325030, Length=383, Percent_Identity=28.9817232375979, Blast_Score=115, Evalue=2e-26, Organism=Saccharomyces cerevisiae, GI6323278, Length=237, Percent_Identity=29.1139240506329, Blast_Score=107, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6324314, Length=365, Percent_Identity=25.7534246575342, Blast_Score=106, Evalue=8e-24, Organism=Saccharomyces cerevisiae, GI6320266, Length=382, Percent_Identity=25.9162303664921, Blast_Score=87, Evalue=9e-18, Organism=Drosophila melanogaster, GI24666836, Length=546, Percent_Identity=29.3040293040293, Blast_Score=186, Evalue=5e-47, Organism=Drosophila melanogaster, GI24642252, Length=542, Percent_Identity=27.6752767527675, Blast_Score=176, Evalue=4e-44, Organism=Drosophila melanogaster, GI18859989, Length=542, Percent_Identity=27.6752767527675, Blast_Score=176, Evalue=4e-44, Organism=Drosophila melanogaster, GI24641342, Length=534, Percent_Identity=28.8389513108614, Blast_Score=174, Evalue=2e-43, Organism=Drosophila melanogaster, GI24648279, Length=155, Percent_Identity=32.258064516129, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI161078426, Length=155, Percent_Identity=32.258064516129, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI21357907, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI116007184, Length=197, Percent_Identity=28.9340101522843, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI221500365, Length=197, Percent_Identity=28.9340101522843, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI281362751, Length=162, Percent_Identity=30.2469135802469, Blast_Score=69, Evalue=9e-12, Organism=Drosophila melanogaster, GI85725262, Length=191, Percent_Identity=28.2722513089005, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI24666092, Length=182, Percent_Identity=29.1208791208791, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI24650853, Length=162, Percent_Identity=30.2469135802469, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24643674, Length=186, Percent_Identity=28.494623655914, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI24650855, Length=162, Percent_Identity=30.2469135802469, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI28574259, Length=195, Percent_Identity=29.2307692307692, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022374 - InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 61748; Mature: 61617
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQYIYTMNRVSKVVPPKRQIIKDISLSFFPGAKIGLLGLNGAGKSTVLKIMAGVDTDFE CCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCC GEARPQPGIKVGYLAQEPQLNPEHTVREAVEEGVGDVLQAQAALDAVYLAYAEEGADFDA CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH LAKEQERLEAILAAADAHTLENQLDVAADALRLPPWDAIVGKLSGGEKRRVALCRLLLQK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHCC PDMLLLDEPTNHLDAESVEWLEQFLARYTGTVVAVTHDRYFLDNAAEWILELDRGRGIPW CCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCC KGNYTDWLTQKDERLKQEDNQEKSRQKAIQKELEWSRQNAKGGRTKGKARLARLEELQSV CCCCHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC DYQKRNETNEIFIPPGERLGNAVMEFKNVSKKFGDRLLIDNLSMIVPPGAIVGIIGPNGA CHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCEEECCCEEEEEECCCCC GKSTLFKMITGQEKPDSGEIVVGPTVQLSYVDQSRDALEGNHNVFQEIAGGLDILNINGI CHHHHHHHHCCCCCCCCCCEEECCEEEEEECCCCHHHHCCCHHHHHHHHCCCEEEECCCE EIQSRAYIGRFNFKGQDQQKMVGSLSGGERGRLHMAKTLLQGGNVLLLDEPSNDLDIETL EEECCEEEEECCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHH RALEDALLEFPGNTFVISHDRWFLDRIATHILAFEGDSHVEFFQGNYREYEEDKRRRMGD HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHEEECCCCCEEECCCCCHHHHHHHHHHCCC DAGPKRLRFKALK CCCCCCCEEEECC >Mature Secondary Structure SQYIYTMNRVSKVVPPKRQIIKDISLSFFPGAKIGLLGLNGAGKSTVLKIMAGVDTDFE CCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCC GEARPQPGIKVGYLAQEPQLNPEHTVREAVEEGVGDVLQAQAALDAVYLAYAEEGADFDA CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH LAKEQERLEAILAAADAHTLENQLDVAADALRLPPWDAIVGKLSGGEKRRVALCRLLLQK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHCC PDMLLLDEPTNHLDAESVEWLEQFLARYTGTVVAVTHDRYFLDNAAEWILELDRGRGIPW CCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCC KGNYTDWLTQKDERLKQEDNQEKSRQKAIQKELEWSRQNAKGGRTKGKARLARLEELQSV CCCCHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC DYQKRNETNEIFIPPGERLGNAVMEFKNVSKKFGDRLLIDNLSMIVPPGAIVGIIGPNGA CHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCEEECCCEEEEEECCCCC GKSTLFKMITGQEKPDSGEIVVGPTVQLSYVDQSRDALEGNHNVFQEIAGGLDILNINGI CHHHHHHHHCCCCCCCCCCEEECCEEEEEECCCCHHHHCCCHHHHHHHHCCCEEEECCCE EIQSRAYIGRFNFKGQDQQKMVGSLSGGERGRLHMAKTLLQGGNVLLLDEPSNDLDIETL EEECCEEEEECCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHH RALEDALLEFPGNTFVISHDRWFLDRIATHILAFEGDSHVEFFQGNYREYEEDKRRRMGD HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHEEECCCCCEEECCCCCHHHHHHHHHHCCC DAGPKRLRFKALK CCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]