| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is yccS [H]
Identifier: 78046100
GI number: 78046100
Start: 609785
End: 611998
Strand: Reverse
Name: yccS [H]
Synonym: XCV0544
Alternate gene names: 78046100
Gene position: 611998-609785 (Counterclockwise)
Preceding gene: 78046101
Following gene: 78046098
Centisome position: 11.82
GC content: 66.98
Gene sequence:
>2214_bases GTGGCCACTCCCTCCTTCGAAACCCGTTTAAGCCGCTTGTGGGCCCATGAAAAGGCCAGCTATGGCCTGCGTGTGTTCAT CGCGCTGGCGGTGGCGATGGGCGTGTGCTGGCACTGGCAACAGCTCACTGCGGTGCCGGCGCTGTTTCTGGGCGCGATCG CCAGCGCCATTGCCGAAACCGACGACAACTGGCTGGGCCGCATCAAATCGGTGCTGCTCTCGCTGCTGTGTTTCGCCGCC GCCGCCGCCGCAGTGGTGGTGCTGTTTCCGTATCCGCTGCCGTTCGTGCTGGGCATGGCGTTGGCTACGTTCTCGCTGAC CCTGCTCGGCGCACTGGGCGAGCGCTATGCCTCGATCGCGCAGGCCACGGTGGCCCTGTCGATCTACGCCATGATCGGCA TGGACCAGCATGGCAGCCGCGATCCGCTGGTCGCCTGGCACGGCGCGGCGCTGCTGCTGATCGGCGCCACCTGGTACGGC GTGCTGTCGATCCTGTGGACCATCCTGTTCGCCAATCGCCCGGTGCGCGAGCGGCTGTCGCGGCTGTTCTTCGAGTTGGG CCGCTACCTCAAGCTCAAGGCCGATCTGTTCGAACCGGTGCGCCAGAGCGACCTGCATGCACGCCGGCTGGCCTTGGCCG AACAAAACGCCAAGGTCGTCGGCGCGCTCAATGCGGCCAAGACCGCGATCATGAGCCGCTTCGGCCGCTCGGGGCGGCCG GGCGTGCAATCGGGCCTGTATTTCCGGCTGTATTACATGGCGCAGGACTTCCACGAGCGCGCCAGCTCCTCGCACTATCC CTACGAGGCGCTCACCGACGCGTTCTTCCACAGCGACGTGCTGTATCGCTGCCAGCGCTTGCTCGCCCTGCAAGGCAAGG CGTGCGCGGCGTTGGGCGAGGCGATTCGCCTGCGCCAACCATTCGATTACGGCGACAGCAGCCGCCTGGCCACCGAAGAC CTGCGCCAATCGCTGGATTATCTGCACGCGCGCGCCGACCCCGCACTGGCCCGCCTGCTCGGCGCGCTGGAGCTGCTGGT GACCAATCTGCAGAGCATCGAACGCAGGTTGTCGGAAGCGGCGCAATCCGATTCCACCAGCGACAACCTCGACACCCGGC TACGCGATTCCTCGCCGCACACCTTGCGCGAAATGGGCGCGCGGCTGGTGCAGCAACTCACGCCCGGCTCGGTGCTGTTC CGCCATGGCCTGCGCATGGCCATCGCGCTGCTGGTGGGCTACGCCATCATGCAATCCATCCACGCCGACAACGGGTACTG GATCCTGCTCACCACCGCATTCGTGTGCCGGCCCAACTACGGCGCCACGCGCCTGCGGCTGGTGCAGCGCATTGCCGGCA CCTTGATCGGCCTGGTCGCCACCTGGGCGCTGATGCAGCTGTTCCCCACCACCGAAGTGCAGCTGCTGCTGGCGCTGGCC GGCGCGCTGGTGTTCTTCATCACCCGCACCGATCGCTACATGCTGGCCACCGCCGGCATCACGGTGATGGCGCTGTTCTG CTTCAACCTGCTGGGCGATGGCTTCGTGCTGATCTGGCCGCGCCTGATCGACACCCTGATCGGTTGCGCGATTGCCGCGG CCGCCTCGTTCCTGATCCTGCCCGACTGGCAGGGCCGCCGGCTGAACCAGGTGATGGCCACGGTGCTCGCCAGCTGCGCG CGTTATCTGGCCCAGGTGCTGGAGCAGTACGCCAGCGGCAAGCGCGACGACCTGCCCTACCGCATTGCGCGCCGCGACAT GCACAACGCCGATGCTGCCTTGTCGGTGGCCTTATCCAACATGCTGCGCGAACCCGGCCGCTATCGGCGCAATCTAGATG CGGGCTTTCGCTTCCTGGCGCTGTCCAACACCTTGCTCGGCTATCTGTCGGCACTGGGCGCGCACCGCGCCGCACTGGAG GGCGAACACGACGCCACCATCGCGCAAGCCGGCGAATATCTGCAGCGCGCACTGAGCGAGATCGCCAGCGCCCTTGGCCA ACGCCAACCGCTGCCGGCGCACGACGAAAGCGAAGAACTGGCCACCGCCGAAGCGCTGGAACACCATCCGGTGCAACTAC CGCCCAAGCAACGCCTGGTGCGCGACCAACTGGCATTGACGCTGCGCCTGCTGCCCAAGCTCCGCGCTGCAGCGCTGGCG GTGACAACGGCGCCGGCGGAGAACACGCCGCGTCTGGCGGCCAGCAAGACCTAG
Upstream 100 bases:
>100_bases GCCTGGCACCGTGCGGCTACTGACAAAGAACTAGCCGCCATCCACACCGGCGGCGCGTGGCTGCGGCAATAATGCCCGGG CTCCCTGCCTTGTAGAGACT
Downstream 100 bases:
>100_bases CCGCCAGCGGTCGACAGGCATGGGCGCCGCGCCGTACATGCAGCCTCGATGCGGTAAGCGATGTCGAACACGGCCATGCC GCGTATTCGCCACTGCGTGC
Product: putative efflux transporter family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 737; Mature: 736
Protein sequence:
>737_residues MATPSFETRLSRLWAHEKASYGLRVFIALAVAMGVCWHWQQLTAVPALFLGAIASAIAETDDNWLGRIKSVLLSLLCFAA AAAAVVVLFPYPLPFVLGMALATFSLTLLGALGERYASIAQATVALSIYAMIGMDQHGSRDPLVAWHGAALLLIGATWYG VLSILWTILFANRPVRERLSRLFFELGRYLKLKADLFEPVRQSDLHARRLALAEQNAKVVGALNAAKTAIMSRFGRSGRP GVQSGLYFRLYYMAQDFHERASSSHYPYEALTDAFFHSDVLYRCQRLLALQGKACAALGEAIRLRQPFDYGDSSRLATED LRQSLDYLHARADPALARLLGALELLVTNLQSIERRLSEAAQSDSTSDNLDTRLRDSSPHTLREMGARLVQQLTPGSVLF RHGLRMAIALLVGYAIMQSIHADNGYWILLTTAFVCRPNYGATRLRLVQRIAGTLIGLVATWALMQLFPTTEVQLLLALA GALVFFITRTDRYMLATAGITVMALFCFNLLGDGFVLIWPRLIDTLIGCAIAAAASFLILPDWQGRRLNQVMATVLASCA RYLAQVLEQYASGKRDDLPYRIARRDMHNADAALSVALSNMLREPGRYRRNLDAGFRFLALSNTLLGYLSALGAHRAALE GEHDATIAQAGEYLQRALSEIASALGQRQPLPAHDESEELATAEALEHHPVQLPPKQRLVRDQLALTLRLLPKLRAAALA VTTAPAENTPRLAASKT
Sequences:
>Translated_737_residues MATPSFETRLSRLWAHEKASYGLRVFIALAVAMGVCWHWQQLTAVPALFLGAIASAIAETDDNWLGRIKSVLLSLLCFAA AAAAVVVLFPYPLPFVLGMALATFSLTLLGALGERYASIAQATVALSIYAMIGMDQHGSRDPLVAWHGAALLLIGATWYG VLSILWTILFANRPVRERLSRLFFELGRYLKLKADLFEPVRQSDLHARRLALAEQNAKVVGALNAAKTAIMSRFGRSGRP GVQSGLYFRLYYMAQDFHERASSSHYPYEALTDAFFHSDVLYRCQRLLALQGKACAALGEAIRLRQPFDYGDSSRLATED LRQSLDYLHARADPALARLLGALELLVTNLQSIERRLSEAAQSDSTSDNLDTRLRDSSPHTLREMGARLVQQLTPGSVLF RHGLRMAIALLVGYAIMQSIHADNGYWILLTTAFVCRPNYGATRLRLVQRIAGTLIGLVATWALMQLFPTTEVQLLLALA GALVFFITRTDRYMLATAGITVMALFCFNLLGDGFVLIWPRLIDTLIGCAIAAAASFLILPDWQGRRLNQVMATVLASCA RYLAQVLEQYASGKRDDLPYRIARRDMHNADAALSVALSNMLREPGRYRRNLDAGFRFLALSNTLLGYLSALGAHRAALE GEHDATIAQAGEYLQRALSEIASALGQRQPLPAHDESEELATAEALEHHPVQLPPKQRLVRDQLALTLRLLPKLRAAALA VTTAPAENTPRLAASKT >Mature_736_residues ATPSFETRLSRLWAHEKASYGLRVFIALAVAMGVCWHWQQLTAVPALFLGAIASAIAETDDNWLGRIKSVLLSLLCFAAA AAAVVVLFPYPLPFVLGMALATFSLTLLGALGERYASIAQATVALSIYAMIGMDQHGSRDPLVAWHGAALLLIGATWYGV LSILWTILFANRPVRERLSRLFFELGRYLKLKADLFEPVRQSDLHARRLALAEQNAKVVGALNAAKTAIMSRFGRSGRPG VQSGLYFRLYYMAQDFHERASSSHYPYEALTDAFFHSDVLYRCQRLLALQGKACAALGEAIRLRQPFDYGDSSRLATEDL RQSLDYLHARADPALARLLGALELLVTNLQSIERRLSEAAQSDSTSDNLDTRLRDSSPHTLREMGARLVQQLTPGSVLFR HGLRMAIALLVGYAIMQSIHADNGYWILLTTAFVCRPNYGATRLRLVQRIAGTLIGLVATWALMQLFPTTEVQLLLALAG ALVFFITRTDRYMLATAGITVMALFCFNLLGDGFVLIWPRLIDTLIGCAIAAAASFLILPDWQGRRLNQVMATVLASCAR YLAQVLEQYASGKRDDLPYRIARRDMHNADAALSVALSNMLREPGRYRRNLDAGFRFLALSNTLLGYLSALGAHRAALEG EHDATIAQAGEYLQRALSEIASALGQRQPLPAHDESEELATAEALEHHPVQLPPKQRLVRDQLALTLRLLPKLRAAALAV TTAPAENTPRLAASKT
Specific function: Unknown
COG id: COG1289
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the yccS/yhfK family [H]
Homologues:
Organism=Escherichia coli, GI87081808, Length=720, Percent_Identity=40.1388888888889, Blast_Score=463, Evalue=1e-131, Organism=Escherichia coli, GI87082248, Length=662, Percent_Identity=24.3202416918429, Blast_Score=104, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010019 - InterPro: IPR010020 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81090; Mature: 80959
Theoretical pI: Translated: 9.45; Mature: 9.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATPSFETRLSRLWAHEKASYGLRVFIALAVAMGVCWHWQQLTAVPALFLGAIASAIAET CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DDNWLGRIKSVLLSLLCFAAAAAAVVVLFPYPLPFVLGMALATFSLTLLGALGERYASIA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH QATVALSIYAMIGMDQHGSRDPLVAWHGAALLLIGATWYGVLSILWTILFANRPVRERLS HHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RLFFELGRYLKLKADLFEPVRQSDLHARRLALAEQNAKVVGALNAAKTAIMSRFGRSGRP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC GVQSGLYFRLYYMAQDFHERASSSHYPYEALTDAFFHSDVLYRCQRLLALQGKACAALGE CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH AIRLRQPFDYGDSSRLATEDLRQSLDYLHARADPALARLLGALELLVTNLQSIERRLSEA HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AQSDSTSDNLDTRLRDSSPHTLREMGARLVQQLTPGSVLFRHGLRMAIALLVGYAIMQSI HHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH HADNGYWILLTTAFVCRPNYGATRLRLVQRIAGTLIGLVATWALMQLFPTTEVQLLLALA HCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH GALVFFITRTDRYMLATAGITVMALFCFNLLGDGFVLIWPRLIDTLIGCAIAAAASFLIL HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHEEC PDWQGRRLNQVMATVLASCARYLAQVLEQYASGKRDDLPYRIARRDMHNADAALSVALSN CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHH MLREPGRYRRNLDAGFRFLALSNTLLGYLSALGAHRAALEGEHDATIAQAGEYLQRALSE HHHCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH IASALGQRQPLPAHDESEELATAEALEHHPVQLPPKQRLVRDQLALTLRLLPKLRAAALA HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VTTAPAENTPRLAASKT EEECCCCCCCCCCCCCC >Mature Secondary Structure ATPSFETRLSRLWAHEKASYGLRVFIALAVAMGVCWHWQQLTAVPALFLGAIASAIAET CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DDNWLGRIKSVLLSLLCFAAAAAAVVVLFPYPLPFVLGMALATFSLTLLGALGERYASIA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH QATVALSIYAMIGMDQHGSRDPLVAWHGAALLLIGATWYGVLSILWTILFANRPVRERLS HHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RLFFELGRYLKLKADLFEPVRQSDLHARRLALAEQNAKVVGALNAAKTAIMSRFGRSGRP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC GVQSGLYFRLYYMAQDFHERASSSHYPYEALTDAFFHSDVLYRCQRLLALQGKACAALGE CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH AIRLRQPFDYGDSSRLATEDLRQSLDYLHARADPALARLLGALELLVTNLQSIERRLSEA HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AQSDSTSDNLDTRLRDSSPHTLREMGARLVQQLTPGSVLFRHGLRMAIALLVGYAIMQSI HHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH HADNGYWILLTTAFVCRPNYGATRLRLVQRIAGTLIGLVATWALMQLFPTTEVQLLLALA HCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH GALVFFITRTDRYMLATAGITVMALFCFNLLGDGFVLIWPRLIDTLIGCAIAAAASFLIL HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHEEC PDWQGRRLNQVMATVLASCARYLAQVLEQYASGKRDDLPYRIARRDMHNADAALSVALSN CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHH MLREPGRYRRNLDAGFRFLALSNTLLGYLSALGAHRAALEGEHDATIAQAGEYLQRALSE HHHCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH IASALGQRQPLPAHDESEELATAEALEHHPVQLPPKQRLVRDQLALTLRLLPKLRAAALA HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VTTAPAENTPRLAASKT EEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]