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The map label for this gene is hrcD

Identifier: 78045975

GI number: 78045975

Start: 469975

End: 470913

Strand: Reverse

Name: hrcD

Synonym: XCV0419

Alternate gene names: NA

Gene position: 470913-469975 (Counterclockwise)

Preceding gene: 78045976

Following gene: 78045974

Centisome position: 9.09

GC content: 63.26

Gene sequence:

>939_bases
ATGACCATGCAGCTTCGCGTAATGACAGGAACCCACGCAGGCGCACGATTAGATTTGGCGCAAGGTCGCTACACCCTGGG
GAGCGATCCACAAACCGATATCCGAATAGACGATTGGCCTGGTTGCTCACTCATTATCGAGGTAGACCAAGATGGTCAGA
TCCGCTATGGCAGCGACACGGTGCAAGAAACGTTCTTTGTTGCATTTCAGCCGGTCCGCTTCGGCCCGCTGGTGCTATGC
GTTGGCGATGCTGCTGCCGATTGGCCGGACGATGTGGCGCTGCTGGAGCGGCTGCTTTCCCCAGCACCGCCGCCGGCGCC
GCGCACGTCCAGGCGCAAAGTCTTGCGTACTGCGGTGGGCGCCGTGCTAGCGCTTGCCGCCGCAGCGTTGCTCCCCTCGT
TGCAGCCGGCGTTTCTGTCCGATGCGGCCACCCGGCAACATCCGGAAAATACCCTCAATCAGGCCAAAGCCTTATTGAAG
CAGCTGGGCTTCCGCGAAGCGCACGCAGAACAGGTCGGCACGCGCGTGCTGATCGAAGGCCTGGTCCCCAGCAGCGCCGA
TGCCGCACGCTTGCGTGCACAGGTGCATCGCTATCACCCAGGCGTTGCCGTCAACGTGGCGGTGGTGGACGAGGTCGTGG
CGACGCTGCGCGACACCCTGGCCGACCCCGCCCTCACCGTCCGTTACGAGGGCAATGGCGTTTTCTCGGTTTCCGGCAGC
AGCGACTACGCAGAACGCGCAAGCCGCCGGATTGCCGACGTCCGCAGCGACCTGGGCCCAGAGGTCCGCGCGCTGCACGT
AGAGATCAGCCAGCAAGACCCGTCCATCAAACCACCGGACAATTACGACGCGGCATTGCTCGCCGATGGCCTGCACTATG
TCGAAACGCCGGATGGCACCAAGCACATGACATCCCTGCCGCAGCAAGCGGCGCAATGA

Upstream 100 bases:

>100_bases
CGGAAAAACCGCGCAGACGGGTCGACCGTACACATGCCATCACACGTCTGAACACACTGCTGATTGAGCAACCACAACAG
GCGGCTCAGGAGGTTCGCCC

Downstream 100 bases:

>100_bases
GAGATCACACCATGTTCGATGCAATGACCGATGCGGTCACTCAGGATATGAGCAAGATTCTGCAGGCCAAGGCGATGGAT
CTGTCCGGCGAGCGGCTGCG

Product: HrcD protein

Products: NA

Alternate protein names: HrpD5 Protein

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MTMQLRVMTGTHAGARLDLAQGRYTLGSDPQTDIRIDDWPGCSLIIEVDQDGQIRYGSDTVQETFFVAFQPVRFGPLVLC
VGDAAADWPDDVALLERLLSPAPPPAPRTSRRKVLRTAVGAVLALAAAALLPSLQPAFLSDAATRQHPENTLNQAKALLK
QLGFREAHAEQVGTRVLIEGLVPSSADAARLRAQVHRYHPGVAVNVAVVDEVVATLRDTLADPALTVRYEGNGVFSVSGS
SDYAERASRRIADVRSDLGPEVRALHVEISQQDPSIKPPDNYDAALLADGLHYVETPDGTKHMTSLPQQAAQ

Sequences:

>Translated_312_residues
MTMQLRVMTGTHAGARLDLAQGRYTLGSDPQTDIRIDDWPGCSLIIEVDQDGQIRYGSDTVQETFFVAFQPVRFGPLVLC
VGDAAADWPDDVALLERLLSPAPPPAPRTSRRKVLRTAVGAVLALAAAALLPSLQPAFLSDAATRQHPENTLNQAKALLK
QLGFREAHAEQVGTRVLIEGLVPSSADAARLRAQVHRYHPGVAVNVAVVDEVVATLRDTLADPALTVRYEGNGVFSVSGS
SDYAERASRRIADVRSDLGPEVRALHVEISQQDPSIKPPDNYDAALLADGLHYVETPDGTKHMTSLPQQAAQ
>Mature_311_residues
TMQLRVMTGTHAGARLDLAQGRYTLGSDPQTDIRIDDWPGCSLIIEVDQDGQIRYGSDTVQETFFVAFQPVRFGPLVLCV
GDAAADWPDDVALLERLLSPAPPPAPRTSRRKVLRTAVGAVLALAAAALLPSLQPAFLSDAATRQHPENTLNQAKALLKQ
LGFREAHAEQVGTRVLIEGLVPSSADAARLRAQVHRYHPGVAVNVAVVDEVVATLRDTLADPALTVRYEGNGVFSVSGSS
DYAERASRRIADVRSDLGPEVRALHVEISQQDPSIKPPDNYDAALLADGLHYVETPDGTKHMTSLPQQAAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33604; Mature: 33473

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMQLRVMTGTHAGARLDLAQGRYTLGSDPQTDIRIDDWPGCSLIIEVDQDGQIRYGSDT
CCEEEEEEECCCCCCEEECCCCCEECCCCCCCCEEEECCCCCEEEEEECCCCCEEECCHH
VQETFFVAFQPVRFGPLVLCVGDAAADWPDDVALLERLLSPAPPPAPRTSRRKVLRTAVG
HHHHHHEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
AVLALAAAALLPSLQPAFLSDAATRQHPENTLNQAKALLKQLGFREAHAEQVGTRVLIEG
HHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEC
LVPSSADAARLRAQVHRYHPGVAVNVAVVDEVVATLRDTLADPALTVRYEGNGVFSVSGS
CCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCC
SDYAERASRRIADVRSDLGPEVRALHVEISQQDPSIKPPDNYDAALLADGLHYVETPDGT
CHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHCCCEEEECCCCC
KHMTSLPQQAAQ
HHHHHHHHHHCC
>Mature Secondary Structure 
TMQLRVMTGTHAGARLDLAQGRYTLGSDPQTDIRIDDWPGCSLIIEVDQDGQIRYGSDT
CEEEEEEECCCCCCEEECCCCCEECCCCCCCCEEEECCCCCEEEEEECCCCCEEECCHH
VQETFFVAFQPVRFGPLVLCVGDAAADWPDDVALLERLLSPAPPPAPRTSRRKVLRTAVG
HHHHHHEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
AVLALAAAALLPSLQPAFLSDAATRQHPENTLNQAKALLKQLGFREAHAEQVGTRVLIEG
HHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEC
LVPSSADAARLRAQVHRYHPGVAVNVAVVDEVVATLRDTLADPALTVRYEGNGVFSVSGS
CCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCC
SDYAERASRRIADVRSDLGPEVRALHVEISQQDPSIKPPDNYDAALLADGLHYVETPDGT
CHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHCCCEEEECCCCC
KHMTSLPQQAAQ
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA