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The map label for this gene is kdgT [H]

Identifier: 78045902

GI number: 78045902

Start: 398058

End: 399014

Strand: Reverse

Name: kdgT [H]

Synonym: XCV0346

Alternate gene names: 78045902

Gene position: 399014-398058 (Counterclockwise)

Preceding gene: 78045903

Following gene: 78045898

Centisome position: 7.71

GC content: 68.76

Gene sequence:

>957_bases
ATGCACATCAAGGCCACGGTGGAGCGACTTCCCGGCGGGATGATGCTGGTCCCCCTGTTGCTTGGGGCGGTTTGCCACAC
GCTCTGGCCGCAGGCCGGCAGCACCTTGGGATCTTTCAGCAACGGGCTGATCAGCGGCACCGTTCCGATCCTGGCGGTGT
GGTTTTTCTGCATGGGGGCAACCATCCAGCTGCGCGCCTCCGGACGGGTGCTGCGCCGTTCGGGCAGCTTGGTGCTGACC
AAGATCGCAATGGCCTGGCTGGTGGCAGTCCTGTGCGCACCGCTGCTTCCCATCGGCGGCGTGCCGAGCGGGCCGCTGGC
CGGGCTGTCGGTCCTGGCGCTGGTGGCTGCGATGGACATGACCAACGGCGGGCTGTACGCCGCGTTGATGCAGCAATACG
GCAGCAGCGAAGACGCAGGGGCGGTGGTGCTGATGTCGCTGGAATCGGGCCCGCTGATCTCCATGCTGATCCTGGGTGCC
AGCGGCCTGGCCAGCTTCGACCCACTGCTGTTCGTCGGTGCGGTGCTGCCGCTGTTGCTGGGCTTTGCGCTCGGCAACCT
CGATGCGCAATTGCGGCAGTTCTTCGCGCAGGCGACCACGACGCTGGTGCCCTTCTTTGGCTTCGCGCTCGGCAACACGC
TGGATCTGTCCACCATCGCCCACACCGGCGCAAGCGGGGTGCTGCTGGGCGTGGCAGTCATCGTGATCACCGGGCTACCC
CTGCTGCTGGCCGACCGTTGGATCGGCGGCGGCAACGGCACGGCCGGGGTGGCGGCCTCCAGCACCGCCGGTGCCGCCGT
GGCCACTCCGGCGCTGATCGCCGGCATGGCACCGCAGTTCGCACCCGCCGCGCCGGCCGCGACGGCGCTGGTGGCCAGCG
CGGTCATCGTCACCTCGTTGCTGGTGCCGTTGCTGACGGCCTTGTATGCACGCCGTGGGGTTGCACGCAGCGGCTGA

Upstream 100 bases:

>100_bases
CGTGTGCGGCTGCGCGCGTTCGCGCCGGGATCTGCGTGCACGCAGGTGCCTGCGCGATGCTGCCAGCCCCGCGCGTGGTG
ACGCGCTCACTGGAACGCAG

Downstream 100 bases:

>100_bases
GAGCCGGGCGGGTGTCATGCGGCCTGCGATGGGAGGCGTGGGCCATGCGCGTTGCGCCATGCATGGCGCCGGCGCGATCA
AGCGCCGGCGACGCCCGTGC

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease [H]

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MHIKATVERLPGGMMLVPLLLGAVCHTLWPQAGSTLGSFSNGLISGTVPILAVWFFCMGATIQLRASGRVLRRSGSLVLT
KIAMAWLVAVLCAPLLPIGGVPSGPLAGLSVLALVAAMDMTNGGLYAALMQQYGSSEDAGAVVLMSLESGPLISMLILGA
SGLASFDPLLFVGAVLPLLLGFALGNLDAQLRQFFAQATTTLVPFFGFALGNTLDLSTIAHTGASGVLLGVAVIVITGLP
LLLADRWIGGGNGTAGVAASSTAGAAVATPALIAGMAPQFAPAAPAATALVASAVIVTSLLVPLLTALYARRGVARSG

Sequences:

>Translated_318_residues
MHIKATVERLPGGMMLVPLLLGAVCHTLWPQAGSTLGSFSNGLISGTVPILAVWFFCMGATIQLRASGRVLRRSGSLVLT
KIAMAWLVAVLCAPLLPIGGVPSGPLAGLSVLALVAAMDMTNGGLYAALMQQYGSSEDAGAVVLMSLESGPLISMLILGA
SGLASFDPLLFVGAVLPLLLGFALGNLDAQLRQFFAQATTTLVPFFGFALGNTLDLSTIAHTGASGVLLGVAVIVITGLP
LLLADRWIGGGNGTAGVAASSTAGAAVATPALIAGMAPQFAPAAPAATALVASAVIVTSLLVPLLTALYARRGVARSG
>Mature_318_residues
MHIKATVERLPGGMMLVPLLLGAVCHTLWPQAGSTLGSFSNGLISGTVPILAVWFFCMGATIQLRASGRVLRRSGSLVLT
KIAMAWLVAVLCAPLLPIGGVPSGPLAGLSVLALVAAMDMTNGGLYAALMQQYGSSEDAGAVVLMSLESGPLISMLILGA
SGLASFDPLLFVGAVLPLLLGFALGNLDAQLRQFFAQATTTLVPFFGFALGNTLDLSTIAHTGASGVLLGVAVIVITGLP
LLLADRWIGGGNGTAGVAASSTAGAAVATPALIAGMAPQFAPAAPAATALVASAVIVTSLLVPLLTALYARRGVARSG

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=317, Percent_Identity=67.8233438485804, Blast_Score=404, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- InterPro:   IPR018395
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 31881; Mature: 31881

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIKATVERLPGGMMLVPLLLGAVCHTLWPQAGSTLGSFSNGLISGTVPILAVWFFCMGA
CCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCC
TIQLRASGRVLRRSGSLVLTKIAMAWLVAVLCAPLLPIGGVPSGPLAGLSVLALVAAMDM
CEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
TNGGLYAALMQQYGSSEDAGAVVLMSLESGPLISMLILGASGLASFDPLLFVGAVLPLLL
CCCHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
GFALGNLDAQLRQFFAQATTTLVPFFGFALGNTLDLSTIAHTGASGVLLGVAVIVITGLP
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHCCH
LLLADRWIGGGNGTAGVAASSTAGAAVATPALIAGMAPQFAPAAPAATALVASAVIVTSL
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
LVPLLTALYARRGVARSG
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MHIKATVERLPGGMMLVPLLLGAVCHTLWPQAGSTLGSFSNGLISGTVPILAVWFFCMGA
CCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCC
TIQLRASGRVLRRSGSLVLTKIAMAWLVAVLCAPLLPIGGVPSGPLAGLSVLALVAAMDM
CEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
TNGGLYAALMQQYGSSEDAGAVVLMSLESGPLISMLILGASGLASFDPLLFVGAVLPLLL
CCCHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
GFALGNLDAQLRQFFAQATTTLVPFFGFALGNTLDLSTIAHTGASGVLLGVAVIVITGLP
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHCCH
LLLADRWIGGGNGTAGVAASSTAGAAVATPALIAGMAPQFAPAAPAATALVASAVIVTSL
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
LVPLLTALYARRGVARSG
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]