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The map label for this gene is 78045816

Identifier: 78045816

GI number: 78045816

Start: 300878

End: 301606

Strand: Reverse

Name: 78045816

Synonym: XCV0260

Alternate gene names: NA

Gene position: 301606-300878 (Counterclockwise)

Preceding gene: 78045817

Following gene: 78045815

Centisome position: 5.82

GC content: 67.76

Gene sequence:

>729_bases
ATGTCCGACCCAGCTGAGCCATGTTATGCCGAAAGCGCGGCACCGCCTGCGTTACGCGCGCAGCTGCAGTGCAGTTGGCA
ATTTCGCCAGGGCGGTCCCGCGCCGCAACCGGTGCTGGTGTTGCCCGATGGCAGCGTCGATCTGATCTGGAACGGCAGCG
AAGTATTCGTTGCCGGGCCGGATCGCATTGCCAATCCCGCATCGGTGGCGGCAGGCACGACGTTGACCGGTGTCCGCCTG
GCAGCGGGCGTGGCAGCCGGTCTGCTGCAGCTGCCGTTACACGCCATTGCCGACCAACGCGTTGCGCTGGAAACGCTGTG
GGGCGAGCGGGGCCGCACATGGCAGCATCGCCTGGAAGACGGCGCCGACCCGTTACAGACCTTGCAGGCACTGTGCCTAC
AGCACGCCGCAGCGCGCGATCCGCAGATGGCTTGGCTGTTCGAACAACTGTCCGTCGGCGCGCCGACCCGGCTAAGCGCG
TTGACCGACGCGTTGGGAATCAGCGAGCGCTCGCTGCGCCGCCGCTGTCAGGACGCGTTCGGCTACGGCAGCAAGACGCT
GGAGCGCGTTCTGCGCCTGCAGCGCTTCCTGCGGATCGTGCGACGGCACCGCAACTTGACCGAGGCCGCGCTGCATGCCG
GCTACGGCGATGCGCCGCATCTGGTGCGCGATGCACGTCAACTCACCGGGCTGAGTCCGCGCGCCCTGGTGCAGCAGCAT
GCACGCTGA

Upstream 100 bases:

>100_bases
ATGCAACTGGGCTGCCGTGCAGCGCACGGCATTGAATCATGGCGCGCTCCACGTTGCGGCACTGCACGCGCCCGCATCCA
CTCTTACGCAGAGTGCCGTC

Downstream 100 bases:

>100_bases
GTTGGCCGTTTTCGCCAAGCCACCGGCGTGCGCCATCTGCATGCTGTGCGCTCGCTCAGGAGCACGCCATGACCGACACC
ACGCAGCACCGCATCGATTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSDPAEPCYAESAAPPALRAQLQCSWQFRQGGPAPQPVLVLPDGSVDLIWNGSEVFVAGPDRIANPASVAAGTTLTGVRL
AAGVAAGLLQLPLHAIADQRVALETLWGERGRTWQHRLEDGADPLQTLQALCLQHAAARDPQMAWLFEQLSVGAPTRLSA
LTDALGISERSLRRRCQDAFGYGSKTLERVLRLQRFLRIVRRHRNLTEAALHAGYGDAPHLVRDARQLTGLSPRALVQQH
AR

Sequences:

>Translated_242_residues
MSDPAEPCYAESAAPPALRAQLQCSWQFRQGGPAPQPVLVLPDGSVDLIWNGSEVFVAGPDRIANPASVAAGTTLTGVRL
AAGVAAGLLQLPLHAIADQRVALETLWGERGRTWQHRLEDGADPLQTLQALCLQHAAARDPQMAWLFEQLSVGAPTRLSA
LTDALGISERSLRRRCQDAFGYGSKTLERVLRLQRFLRIVRRHRNLTEAALHAGYGDAPHLVRDARQLTGLSPRALVQQH
AR
>Mature_241_residues
SDPAEPCYAESAAPPALRAQLQCSWQFRQGGPAPQPVLVLPDGSVDLIWNGSEVFVAGPDRIANPASVAAGTTLTGVRLA
AGVAAGLLQLPLHAIADQRVALETLWGERGRTWQHRLEDGADPLQTLQALCLQHAAARDPQMAWLFEQLSVGAPTRLSAL
TDALGISERSLRRRCQDAFGYGSKTLERVLRLQRFLRIVRRHRNLTEAALHAGYGDAPHLVRDARQLTGLSPRALVQQHA
R

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26318; Mature: 26187

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPAEPCYAESAAPPALRAQLQCSWQFRQGGPAPQPVLVLPDGSVDLIWNGSEVFVAGP
CCCCCCCCCCCCCCCHHHHHHHHEEEECCCCCCCCCCEEEECCCCEEEEECCCEEEEECC
DRIANPASVAAGTTLTGVRLAAGVAAGLLQLPLHAIADQRVALETLWGERGRTWQHRLED
CHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC
GADPLQTLQALCLQHAAARDPQMAWLFEQLSVGAPTRLSALTDALGISERSLRRRCQDAF
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
GYGSKTLERVLRLQRFLRIVRRHRNLTEAALHAGYGDAPHLVRDARQLTGLSPRALVQQH
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
AR
CC
>Mature Secondary Structure 
SDPAEPCYAESAAPPALRAQLQCSWQFRQGGPAPQPVLVLPDGSVDLIWNGSEVFVAGP
CCCCCCCCCCCCCCHHHHHHHHEEEECCCCCCCCCCEEEECCCCEEEEECCCEEEEECC
DRIANPASVAAGTTLTGVRLAAGVAAGLLQLPLHAIADQRVALETLWGERGRTWQHRLED
CHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC
GADPLQTLQALCLQHAAARDPQMAWLFEQLSVGAPTRLSALTDALGISERSLRRRCQDAF
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
GYGSKTLERVLRLQRFLRIVRRHRNLTEAALHAGYGDAPHLVRDARQLTGLSPRALVQQH
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
AR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7517396 [H]