Click here to switch to the map view.

The map label for this gene is 78045813

Identifier: 78045813

GI number: 78045813

Start: 298401

End: 299438

Strand: Reverse

Name: 78045813

Synonym: XCV0257

Alternate gene names: NA

Gene position: 299438-298401 (Counterclockwise)

Preceding gene: 78045815

Following gene: 78045812

Centisome position: 5.78

GC content: 67.53

Gene sequence:

>1038_bases
ATGGCTTCCCCACGCCCTTCCCCGTATGTCGATTCGCCGCAGTTTCGCGCTGGCCGCTTCCGTAATGCCATGCCGTTGCC
GACCACCGTCATGACCCTGCGCGAGCAGCTCGGCCTGATGTGGGCCATGGTATTCGGCAAGCCCCGCACCACGGCGCCCT
CCGCGCCCTTGCCGGTGCAGCCGCTGACACGCGCGCAACTGCTGGCCGCACCGGATCGCAGCCTGTACCGGCTGGGCCAT
TCCACCCTGCTGATGAAGCTGGCGGGCGGGCTGTGGCTGACCGACCCGGTGTTTTCCAAACGCGCCTCGCCGGTGCCGTT
CGCCGGACCCAAGCGCTTCCACGCCCCGCCGATTGCGCTGGACGCGCTGCCGCCGCTGGCTGGGGTGATCCTGTCGCATG
ACCACTACGACCATCTCGACCGCGCCACCATCGGTGCGCTGGCCGACCGTGTCGGCGTGTTTGTCGCTCCGTTGGGCGTG
GGCGACCTGCTGGTGCGCTGGGGCGTGGACCCGGCCAAGGTGCGGCAGCTGGACTGGTGGGAGTCGATCAGCGTTGCCGG
CCTGCAGCTCACCGCCACCCCGTCGCAACATTTTTCCGGCCGCGGGCTGTTCGACAACGGGCGCACGCTGTGGTGTTCCT
GGGTGATCCAGGCAGGTGACCTGCGTTTGTTCTTCAGCGGCGACGGCGGCTATGGCCCGCACTTCAAGACCATCGGCGAG
CAGCTCGGGCCGTTCGATGTGGCATTGATCGAAAACGGCGCCTACGACCACATGTGGCCGCACGTGCACATGCAGCCGGA
GCAGACCTTGCAGGCCTTCTTCGACGTCGGCGGGCATACCTTGTTGCCTATCCACAACGGCACCTTCGACCTGGCCTTGC
ATGCCTGGTCCGAGCCGTTCGAGCGCATCGTCGCGTTGGCGGCGGCCGCAAACGTTCCGCTGGCCATCCCGCAGATGGGC
GAACGGGTGAACGCGCACCGCCCGGACACCGATCAACGCTGGTGGCGCACGCTGCCCGACACTCTGGTACTTGCGTGA

Upstream 100 bases:

>100_bases
GTCCATGCCGATCCTGACGCCAGTTCCACCCAGTGCTTGCTGCATCGCCGTTGCCTGATCGCTCGTCCTTCTGCTCTCCC
ACGTCTTGCCCGGACTTCCT

Downstream 100 bases:

>100_bases
TGAGCGGCTGGACGCTAGCCGATCTGCCATCGCAGCGGGGACGAGTGGCCATCGTCACCGGCGCCAGTCCCGGCGGACTG
GGCTACGAAACCGCGCTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MASPRPSPYVDSPQFRAGRFRNAMPLPTTVMTLREQLGLMWAMVFGKPRTTAPSAPLPVQPLTRAQLLAAPDRSLYRLGH
STLLMKLAGGLWLTDPVFSKRASPVPFAGPKRFHAPPIALDALPPLAGVILSHDHYDHLDRATIGALADRVGVFVAPLGV
GDLLVRWGVDPAKVRQLDWWESISVAGLQLTATPSQHFSGRGLFDNGRTLWCSWVIQAGDLRLFFSGDGGYGPHFKTIGE
QLGPFDVALIENGAYDHMWPHVHMQPEQTLQAFFDVGGHTLLPIHNGTFDLALHAWSEPFERIVALAAAANVPLAIPQMG
ERVNAHRPDTDQRWWRTLPDTLVLA

Sequences:

>Translated_345_residues
MASPRPSPYVDSPQFRAGRFRNAMPLPTTVMTLREQLGLMWAMVFGKPRTTAPSAPLPVQPLTRAQLLAAPDRSLYRLGH
STLLMKLAGGLWLTDPVFSKRASPVPFAGPKRFHAPPIALDALPPLAGVILSHDHYDHLDRATIGALADRVGVFVAPLGV
GDLLVRWGVDPAKVRQLDWWESISVAGLQLTATPSQHFSGRGLFDNGRTLWCSWVIQAGDLRLFFSGDGGYGPHFKTIGE
QLGPFDVALIENGAYDHMWPHVHMQPEQTLQAFFDVGGHTLLPIHNGTFDLALHAWSEPFERIVALAAAANVPLAIPQMG
ERVNAHRPDTDQRWWRTLPDTLVLA
>Mature_344_residues
ASPRPSPYVDSPQFRAGRFRNAMPLPTTVMTLREQLGLMWAMVFGKPRTTAPSAPLPVQPLTRAQLLAAPDRSLYRLGHS
TLLMKLAGGLWLTDPVFSKRASPVPFAGPKRFHAPPIALDALPPLAGVILSHDHYDHLDRATIGALADRVGVFVAPLGVG
DLLVRWGVDPAKVRQLDWWESISVAGLQLTATPSQHFSGRGLFDNGRTLWCSWVIQAGDLRLFFSGDGGYGPHFKTIGEQ
LGPFDVALIENGAYDHMWPHVHMQPEQTLQAFFDVGGHTLLPIHNGTFDLALHAWSEPFERIVALAAAANVPLAIPQMGE
RVNAHRPDTDQRWWRTLPDTLVLA

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To K.pneumoniae romA [H]

Homologues:

Organism=Homo sapiens, GI170932483, Length=310, Percent_Identity=36.1290322580645, Blast_Score=186, Evalue=2e-47,
Organism=Homo sapiens, GI170932481, Length=310, Percent_Identity=36.1290322580645, Blast_Score=186, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI17543100, Length=283, Percent_Identity=34.982332155477, Blast_Score=157, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17543102, Length=283, Percent_Identity=34.982332155477, Blast_Score=157, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI25148824, Length=283, Percent_Identity=34.982332155477, Blast_Score=156, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17543104, Length=285, Percent_Identity=34.0350877192982, Blast_Score=145, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6325154, Length=241, Percent_Identity=31.9502074688797, Blast_Score=109, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37959; Mature: 37828

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASPRPSPYVDSPQFRAGRFRNAMPLPTTVMTLREQLGLMWAMVFGKPRTTAPSAPLPVQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PLTRAQLLAAPDRSLYRLGHSTLLMKLAGGLWLTDPVFSKRASPVPFAGPKRFHAPPIAL
CCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEECHHHHCCCCCCCCCCCCCCCCCCEEH
DALPPLAGVILSHDHYDHLDRATIGALADRVGVFVAPLGVGDLLVRWGVDPAKVRQLDWW
HCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHCCCCHHHHHHHHHH
ESISVAGLQLTATPSQHFSGRGLFDNGRTLWCSWVIQAGDLRLFFSGDGGYGPHFKTIGE
HCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCCCCHHHHHHH
QLGPFDVALIENGAYDHMWPHVHMQPEQTLQAFFDVGGHTLLPIHNGTFDLALHAWSEPF
HCCCEEEEEECCCCCCCCCCCEECCHHHHHHHHHHCCCCEEEEEECCCEEEEEHHHHHHH
ERIVALAAAANVPLAIPQMGERVNAHRPDTDQRWWRTLPDTLVLA
HHHHHHHHHCCCCEECHHHHHHCCCCCCCCHHHHHHHCCCCEECC
>Mature Secondary Structure 
ASPRPSPYVDSPQFRAGRFRNAMPLPTTVMTLREQLGLMWAMVFGKPRTTAPSAPLPVQ
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PLTRAQLLAAPDRSLYRLGHSTLLMKLAGGLWLTDPVFSKRASPVPFAGPKRFHAPPIAL
CCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEECHHHHCCCCCCCCCCCCCCCCCCEEH
DALPPLAGVILSHDHYDHLDRATIGALADRVGVFVAPLGVGDLLVRWGVDPAKVRQLDWW
HCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHCCCCHHHHHHHHHH
ESISVAGLQLTATPSQHFSGRGLFDNGRTLWCSWVIQAGDLRLFFSGDGGYGPHFKTIGE
HCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCCCCHHHHHHH
QLGPFDVALIENGAYDHMWPHVHMQPEQTLQAFFDVGGHTLLPIHNGTFDLALHAWSEPF
HCCCEEEEEECCCCCCCCCCCEECCHHHHHHHHHHCCCCEEEEEECCCEEEEEHHHHHHH
ERIVALAAAANVPLAIPQMGERVNAHRPDTDQRWWRTLPDTLVLA
HHHHHHHHHCCCCEECHHHHHHCCCCCCCCHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]