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The map label for this gene is yagA [C]

Identifier: 78045784

GI number: 78045784

Start: 267404

End: 268231

Strand: Reverse

Name: yagA [C]

Synonym: XCV0228

Alternate gene names: 78045784

Gene position: 268231-267404 (Counterclockwise)

Preceding gene: 78045785

Following gene: 78045783

Centisome position: 5.18

GC content: 63.89

Gene sequence:

>828_bases
ATGGTGAGGCCATCTCAGCGACGCGAGATGGCCCAATCGGCGGTCACGAGCGGGCGCACGAACATCCGCCACGCCTGCCA
GACCTTCGCGGTGAGCCAGACCTGCTTCCGCTACCAGGCCAAGGCCAGCGAGCAGAACGCCCGGATCGCCGACTGGCTGA
TCCGGTTGACGACCGCCCATCGCGACTGGGGCTTTGGCCTGTGCTACCTGTACCTGCGCAACGTGAAGGGCTTTGGTTGG
AACCACAAGCGGATCTACCGGATCTACCGCGAGTTGGAGTTGAACCTGCGGATCAAGCCGAAGAAGCGGCTGGTGCGTGA
GCGGCCGCAGCCACTGGCGGTGCCGGAGACGATCAACCAAGTCTGGTCGATGGACTTCATGCAGGACCAGCTGGCCGACG
GCCGCAGCTTCAGGCTGTTCAACGTGCTCGACGACTTCAATCGCGAGGGACTGGGGATCGAGGTCGACCTGTCGCTGCCG
TCAGCCCGGGTGATCCGATCGCTGGAGCAGATCATCGAGTGGCGCGGCAAGCCCGCCGTGATCCGCTGCGACAACGGCCC
TGAATACATCAGTGGCGCGTTGCTGTCCTGGGCGCAGCGGCATGGTATCCGGGTCGAGCACATCCAGCCGGGCAAGCCAC
AGCAGAACGCCTACGTTGAACGCTACAACCGCACCATCCGCTACGCCTGGCTCGCCCAAACCCTGTTCGACACCATCGAC
CAGGTGCAGGACAAAGCCACCCGCTGGCTATGGACGTACAACCACGAGCGTCCGAATATGGCGCTCGGCGGCATCACGCC
TGCCATGAAGTTGGCGATGGCCGCTTAG

Upstream 100 bases:

>100_bases
CGCGCATGAAGGAGCTGGAGGAGGAGAACCGCCGGCTCAAGAAGATGTACGCCGAGGCGCAGCTCAGTACCGACCTGCTG
AAGGAAGCGCTCGCAAAAAA

Downstream 100 bases:

>100_bases
CTCCACTTCTGGCGACCGCTAAAAGTGGGGGGATTACCCCTCGACGTGAGCGAGAGCCCCCCCGGACTCATCCAGAAGCT
CTGCAATGACGTTCGGCTCT

Product: ISxac2 transposase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MVRPSQRREMAQSAVTSGRTNIRHACQTFAVSQTCFRYQAKASEQNARIADWLIRLTTAHRDWGFGLCYLYLRNVKGFGW
NHKRIYRIYRELELNLRIKPKKRLVRERPQPLAVPETINQVWSMDFMQDQLADGRSFRLFNVLDDFNREGLGIEVDLSLP
SARVIRSLEQIIEWRGKPAVIRCDNGPEYISGALLSWAQRHGIRVEHIQPGKPQQNAYVERYNRTIRYAWLAQTLFDTID
QVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA

Sequences:

>Translated_275_residues
MVRPSQRREMAQSAVTSGRTNIRHACQTFAVSQTCFRYQAKASEQNARIADWLIRLTTAHRDWGFGLCYLYLRNVKGFGW
NHKRIYRIYRELELNLRIKPKKRLVRERPQPLAVPETINQVWSMDFMQDQLADGRSFRLFNVLDDFNREGLGIEVDLSLP
SARVIRSLEQIIEWRGKPAVIRCDNGPEYISGALLSWAQRHGIRVEHIQPGKPQQNAYVERYNRTIRYAWLAQTLFDTID
QVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA
>Mature_275_residues
MVRPSQRREMAQSAVTSGRTNIRHACQTFAVSQTCFRYQAKASEQNARIADWLIRLTTAHRDWGFGLCYLYLRNVKGFGW
NHKRIYRIYRELELNLRIKPKKRLVRERPQPLAVPETINQVWSMDFMQDQLADGRSFRLFNVLDDFNREGLGIEVDLSLP
SARVIRSLEQIIEWRGKPAVIRCDNGPEYISGALLSWAQRHGIRVEHIQPGKPQQNAYVERYNRTIRYAWLAQTLFDTID
QVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=162, Percent_Identity=29.6296296296296, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 32133; Mature: 32133

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRPSQRREMAQSAVTSGRTNIRHACQTFAVSQTCFRYQAKASEQNARIADWLIRLTTAH
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
RDWGFGLCYLYLRNVKGFGWNHKRIYRIYRELELNLRIKPKKRLVRERPQPLAVPETINQ
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEECHHHHHHHCCCCCCCCHHHHHH
VWSMDFMQDQLADGRSFRLFNVLDDFNREGLGIEVDLSLPSARVIRSLEQIIEWRGKPAV
HHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCE
IRCDNGPEYISGALLSWAQRHGIRVEHIQPGKPQQNAYVERYNRTIRYAWLAQTLFDTID
EEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
QVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA
HHHHHHHHEEEEECCCCCCEEECCCCHHHHHHHCC
>Mature Secondary Structure
MVRPSQRREMAQSAVTSGRTNIRHACQTFAVSQTCFRYQAKASEQNARIADWLIRLTTAH
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
RDWGFGLCYLYLRNVKGFGWNHKRIYRIYRELELNLRIKPKKRLVRERPQPLAVPETINQ
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEECHHHHHHHCCCCCCCCHHHHHH
VWSMDFMQDQLADGRSFRLFNVLDDFNREGLGIEVDLSLPSARVIRSLEQIIEWRGKPAV
HHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCE
IRCDNGPEYISGALLSWAQRHGIRVEHIQPGKPQQNAYVERYNRTIRYAWLAQTLFDTID
EEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
QVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA
HHHHHHHHEEEEECCCCCCEEECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]