| Definition | Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome. |
|---|---|
| Accession | NC_007503 |
| Length | 2,401,520 |
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The map label for this gene is 78045217
Identifier: 78045217
GI number: 78045217
Start: 420120
End: 421382
Strand: Direct
Name: 78045217
Synonym: CHY_0484
Alternate gene names: NA
Gene position: 420120-421382 (Clockwise)
Preceding gene: 78042847
Following gene: 78044819
Centisome position: 17.49
GC content: 45.13
Gene sequence:
>1263_bases ATGAGAATAAAAGATGTCCTTTTTGTTAAAGGAAGTTCCGGGTTTTATTTTGATGACCAGAAAGCAATAAAGAGCGGTGC TGTCACCGATGGCTTTACCTATAAAGGGAAGCCTTTAACCCCTGGTTTTTCCCGGGTGCGCCAGGGAGGAGAGGCGGTCT CGATAATGCTTTTCTTGGAAAACGGCGAAATAGCCGTTGGCGATTGCGTGGCGGTACAATATTCAGGGGTAGATGGCCGG GATCCGGTCTTTTTAGCGGATAATTTTATAGAAGTCCTTGAGGAAGAGATTAAGCCCAGATTGGTAGGGTATAACCTCGT TCGCTTTAGGGAAGCAGCCCGCTATTTTACTAATCTTACCGATAAACGGGGTAAGAGATACCACACTGCTTTGCGTTACG GTTTAACTCAGGCCCTCTTAGATGCGGTGGCTAAGATAAACCGTACCACCATGGCCGAAGTAATTGCGGAAGAGTATGGG CTCGACCTTACTTTAAATCCGGTGCCGCTATTTGCCCAGTCGGGGGACGACCGGTATATCAATGCCGATAAAATGATCTT AAAACGGGTTGATGTTCTGCCCCATGGTTTATTTAACCATCCTGCCAAAACCGGGGAGGAAGGGAAAAATTTAACCGAAT ACGCATTGTGGTTAAAACAAAGAATAAAAACCCTGGGTGACCACGATTACCTGCCGGTGTTTCACTTTGACGTTTACGGT ACCCTGGGAACGGTATTTAATGATAATTTAGACCGGATAGCCGATTACTTAGCAAGACTGGAAGAAAAGGTTGCTCCCCA TCCTTTACAAATAGAAGGGCCGGTGGACCTTGGCTCAAAAGAAAGGCAGATTGAAGGACTAAAATACTTGCAGGAAAAAC TTATTACTTTGGGAAGTAAGGTGATTATTGTAGCCGATGAGTGGTGTAATAATCTATCTGACATTAAAGAATTTGTTGAT GCTGGTGCCGGTGGGATGGTGCAAATTAAATCTCCCGATTTAGGTGGGGTAAACGATATTATCGAAGCGGTTTTATATGC CAAGGAAAAGGGTACCGGTGCCTATTTGGGCGGTAGCTGTAACGAAACCGATGTATCGGCCAAAATTACCGTTCATGTGG GACTTGCTACAGGCCCGGCTCAACTCCTGGTTAAACCGGGGATGGGAGTTGATGAAGGATTAACCATTATGCGTAATGAA ATGATGCGGACGCTGGCGATTTTACAGAGAAACAAGGTCACATTTCAGAAAAAAGTTGGTTAG
Upstream 100 bases:
>100_bases AAAAGAATTTTTTTAAATAAAAAGCCTGTGCCCTTGCAGGTTTTTTAAAATAAAGTTAAAATTATACTGTATACAAAATA CAAAACGAGGAGCGGTGGCA
Downstream 100 bases:
>100_bases CCGGAAGGAAAACCTTCCGGTTTTTTTATTACTTTTTGCAATAATTTCAAGAGATAAAATAACAAAATGGAATTTTACAA ATAAAATAAATTAATATAAC
Product: methylaspartate ammonia-lyase
Products: NA
Alternate protein names: Beta-methylaspartase [H]
Number of amino acids: Translated: 420; Mature: 420
Protein sequence:
>420_residues MRIKDVLFVKGSSGFYFDDQKAIKSGAVTDGFTYKGKPLTPGFSRVRQGGEAVSIMLFLENGEIAVGDCVAVQYSGVDGR DPVFLADNFIEVLEEEIKPRLVGYNLVRFREAARYFTNLTDKRGKRYHTALRYGLTQALLDAVAKINRTTMAEVIAEEYG LDLTLNPVPLFAQSGDDRYINADKMILKRVDVLPHGLFNHPAKTGEEGKNLTEYALWLKQRIKTLGDHDYLPVFHFDVYG TLGTVFNDNLDRIADYLARLEEKVAPHPLQIEGPVDLGSKERQIEGLKYLQEKLITLGSKVIIVADEWCNNLSDIKEFVD AGAGGMVQIKSPDLGGVNDIIEAVLYAKEKGTGAYLGGSCNETDVSAKITVHVGLATGPAQLLVKPGMGVDEGLTIMRNE MMRTLAILQRNKVTFQKKVG
Sequences:
>Translated_420_residues MRIKDVLFVKGSSGFYFDDQKAIKSGAVTDGFTYKGKPLTPGFSRVRQGGEAVSIMLFLENGEIAVGDCVAVQYSGVDGR DPVFLADNFIEVLEEEIKPRLVGYNLVRFREAARYFTNLTDKRGKRYHTALRYGLTQALLDAVAKINRTTMAEVIAEEYG LDLTLNPVPLFAQSGDDRYINADKMILKRVDVLPHGLFNHPAKTGEEGKNLTEYALWLKQRIKTLGDHDYLPVFHFDVYG TLGTVFNDNLDRIADYLARLEEKVAPHPLQIEGPVDLGSKERQIEGLKYLQEKLITLGSKVIIVADEWCNNLSDIKEFVD AGAGGMVQIKSPDLGGVNDIIEAVLYAKEKGTGAYLGGSCNETDVSAKITVHVGLATGPAQLLVKPGMGVDEGLTIMRNE MMRTLAILQRNKVTFQKKVG >Mature_420_residues MRIKDVLFVKGSSGFYFDDQKAIKSGAVTDGFTYKGKPLTPGFSRVRQGGEAVSIMLFLENGEIAVGDCVAVQYSGVDGR DPVFLADNFIEVLEEEIKPRLVGYNLVRFREAARYFTNLTDKRGKRYHTALRYGLTQALLDAVAKINRTTMAEVIAEEYG LDLTLNPVPLFAQSGDDRYINADKMILKRVDVLPHGLFNHPAKTGEEGKNLTEYALWLKQRIKTLGDHDYLPVFHFDVYG TLGTVFNDNLDRIADYLARLEEKVAPHPLQIEGPVDLGSKERQIEGLKYLQEKLITLGSKVIIVADEWCNNLSDIKEFVD AGAGGMVQIKSPDLGGVNDIIEAVLYAKEKGTGAYLGGSCNETDVSAKITVHVGLATGPAQLLVKPGMGVDEGLTIMRNE MMRTLAILQRNKVTFQKKVG
Specific function: Unknown
COG id: COG3799
COG function: function code E; Methylaspartate ammonia-lyase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006395 - InterPro: IPR022662 - InterPro: IPR022665 [H]
Pfam domain/function: PF07476 MAAL_C; PF05034 MAAL_N [H]
EC number: =4.3.1.2 [H]
Molecular weight: Translated: 46399; Mature: 46399
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIKDVLFVKGSSGFYFDDQKAIKSGAVTDGFTYKGKPLTPGFSRVRQGGEAVSIMLFLE CCCCEEEEEECCCCCEECCHHHHHCCCCCCCCEECCCCCCCCHHHHHCCCCEEEEEEEEE NGEIAVGDCVAVQYSGVDGRDPVFLADNFIEVLEEEIKPRLVGYNLVRFREAARYFTNLT CCCEEEEEEEEEEECCCCCCCCEEEHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHH DKRGKRYHTALRYGLTQALLDAVAKINRTTMAEVIAEEYGLDLTLNPVPLFAQSGDDRYI HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCEE NADKMILKRVDVLPHGLFNHPAKTGEEGKNLTEYALWLKQRIKTLGDHDYLPVFHFDVYG CHHHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHH TLGTVFNDNLDRIADYLARLEEKVAPHPLQIEGPVDLGSKERQIEGLKYLQEKLITLGSK HHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCC VIIVADEWCNNLSDIKEFVDAGAGGMVQIKSPDLGGVNDIIEAVLYAKEKGTGAYLGGSC EEEEECHHCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCC NETDVSAKITVHVGLATGPAQLLVKPGMGVDEGLTIMRNEMMRTLAILQRNKVTFQKKVG CCCCCEEEEEEEEEECCCCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCC >Mature Secondary Structure MRIKDVLFVKGSSGFYFDDQKAIKSGAVTDGFTYKGKPLTPGFSRVRQGGEAVSIMLFLE CCCCEEEEEECCCCCEECCHHHHHCCCCCCCCEECCCCCCCCHHHHHCCCCEEEEEEEEE NGEIAVGDCVAVQYSGVDGRDPVFLADNFIEVLEEEIKPRLVGYNLVRFREAARYFTNLT CCCEEEEEEEEEEECCCCCCCCEEEHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHH DKRGKRYHTALRYGLTQALLDAVAKINRTTMAEVIAEEYGLDLTLNPVPLFAQSGDDRYI HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCEE NADKMILKRVDVLPHGLFNHPAKTGEEGKNLTEYALWLKQRIKTLGDHDYLPVFHFDVYG CHHHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHH TLGTVFNDNLDRIADYLARLEEKVAPHPLQIEGPVDLGSKERQIEGLKYLQEKLITLGSK HHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCC VIIVADEWCNNLSDIKEFVDAGAGGMVQIKSPDLGGVNDIIEAVLYAKEKGTGAYLGGSC EEEEECHHCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCC NETDVSAKITVHVGLATGPAQLLVKPGMGVDEGLTIMRNEMMRTLAILQRNKVTFQKKVG CCCCCEEEEEEEEEECCCCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1420191; 8454064; 8428631; 1397267 [H]