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The map label for this gene is cad [H]

Identifier: 78045175

GI number: 78045175

Start: 39554

End: 40882

Strand: Direct

Name: cad [H]

Synonym: CHY_0049

Alternate gene names: 78045175

Gene position: 39554-40882 (Clockwise)

Preceding gene: 78044185

Following gene: 78044441

Centisome position: 1.65

GC content: 44.02

Gene sequence:

>1329_bases
ATGTCAGGTTTAATAGATAAAATCCAAAAACATATCCAAAAAAAACCTATCTCTTTCCACATGCCCGGTCATAAAAATGG
CCGGTTTATACCGAAAAAAGTAAAAAATCTTTTAGGAGAAAAATATTTCAAAGCAGATTTAACCGAGCTTCCGGGTCTCG
ATAACCTTTATGCGCCGGAAGAGGCCATACTTAAATTAGAGGAGAAACTTTCCCGCTACTTTGGTTTACCCCGGGCGCAT
CTATCGGTTAACGGCTCTACGGCGGCGGTAATAGCCTTACTGCTTTCGTTTTTTCGGCCGGGTGAAAAAATAGCAATTGA
TCGGATGTCCCACGTATCTCTGTACCATGGGATGGTTTTAGGGGATTTAATTCCGGAATTTATCTATCCTCATTGGGACG
AGGAGTACGGACTTCCGGTAAATAAGACTCCTAAAGCTCACAACAAAAGTTATTTTCTGACCAACCCCGACTACCAGGGG
CTAATCCGGGATTTAACGGAGCTTAAAACCGACCGGCTCCTTCTGGATGCGGCCCACGGGGGTTTAATTCCTCTATGGCG
ACCGGATTTTTTTAAAAACATTGCAGGATTTGCGGTAAGCCTGCATAAAACCGGTCCCTTTCCCAATCCTCTGGCGGCGG
TGGTTTTTCGGGATAAAGGGATAGAAGTGAAACGGGCGCTAAACTTAATCCAAACTACCAGCCCTTCGTACCCCTTAATG
GCTGCGGCCGAGGGCGGGGTGGACATGCTATTAAAGGTTGGTGCACGAGCCTTTCAAAAAGCCAAGGAGCTTTCGGACCA
TTTTAAGGAGTACTTGAAAAAACGGGGGATCGGGTTTCTTCAGGATAAATACCCGGCGGACCCTTTAAAAGTTACCATAA
AAGCGGCGGATTTGGGTGTTTCCGGAGAAAAAATTGCCGCAAAGTTAATGAAAAAGGGAATTTATCCGGAGGCTTACGGT
CCGGGTTATGTGCTTTTTATGTTTTCCCCGGGTAATACCGAAAAAGATGTCAAAAAGCTTATAAACATTATTGAAACAAT
AAAAGGTACAGATAAAAAAATCTTTATCCCGAAAAATCCTTTTAGTTTTCAGCCAGAACTAAAATTAACCCCGCGGGAAG
TGTATTATGCCCAAGAAAAGCTTGTGGATTTAAAAGCTTCAGTGGGTTATACTGCCCGGGATGGGGTTACGGTTTACCCT
CCGGGAGCACCGGTACTCTATCCGGGGGAAGAAATTACTAAAGAAGCAGTGGAGTATTTAGAGTATCATTTAAACTTGGG
AGTAAAGGTAACCGGGATATATGATGGCAGGATAAAGGTGGTAAGGTAA

Upstream 100 bases:

>100_bases
CTGCCTATCCGTTCATCGTCAAAAGGTTTCGAAACTTTTTCTTAAAACAAAAGCAGTTATGGTAAAATTATTGTAAAAGG
TTAAATCTTAAGGAGAAGCT

Downstream 100 bases:

>100_bases
TGCGCGGTAAATTTATTACCATTGAAGGGGTGGAAGGGTCAGGAAAAACCACCCAGATACAATATATTGCTCGGTATCTT
ACAGAAAAAAATATACCCCA

Product: lysine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MSGLIDKIQKHIQKKPISFHMPGHKNGRFIPKKVKNLLGEKYFKADLTELPGLDNLYAPEEAILKLEEKLSRYFGLPRAH
LSVNGSTAAVIALLLSFFRPGEKIAIDRMSHVSLYHGMVLGDLIPEFIYPHWDEEYGLPVNKTPKAHNKSYFLTNPDYQG
LIRDLTELKTDRLLLDAAHGGLIPLWRPDFFKNIAGFAVSLHKTGPFPNPLAAVVFRDKGIEVKRALNLIQTTSPSYPLM
AAAEGGVDMLLKVGARAFQKAKELSDHFKEYLKKRGIGFLQDKYPADPLKVTIKAADLGVSGEKIAAKLMKKGIYPEAYG
PGYVLFMFSPGNTEKDVKKLINIIETIKGTDKKIFIPKNPFSFQPELKLTPREVYYAQEKLVDLKASVGYTARDGVTVYP
PGAPVLYPGEEITKEAVEYLEYHLNLGVKVTGIYDGRIKVVR

Sequences:

>Translated_442_residues
MSGLIDKIQKHIQKKPISFHMPGHKNGRFIPKKVKNLLGEKYFKADLTELPGLDNLYAPEEAILKLEEKLSRYFGLPRAH
LSVNGSTAAVIALLLSFFRPGEKIAIDRMSHVSLYHGMVLGDLIPEFIYPHWDEEYGLPVNKTPKAHNKSYFLTNPDYQG
LIRDLTELKTDRLLLDAAHGGLIPLWRPDFFKNIAGFAVSLHKTGPFPNPLAAVVFRDKGIEVKRALNLIQTTSPSYPLM
AAAEGGVDMLLKVGARAFQKAKELSDHFKEYLKKRGIGFLQDKYPADPLKVTIKAADLGVSGEKIAAKLMKKGIYPEAYG
PGYVLFMFSPGNTEKDVKKLINIIETIKGTDKKIFIPKNPFSFQPELKLTPREVYYAQEKLVDLKASVGYTARDGVTVYP
PGAPVLYPGEEITKEAVEYLEYHLNLGVKVTGIYDGRIKVVR
>Mature_441_residues
SGLIDKIQKHIQKKPISFHMPGHKNGRFIPKKVKNLLGEKYFKADLTELPGLDNLYAPEEAILKLEEKLSRYFGLPRAHL
SVNGSTAAVIALLLSFFRPGEKIAIDRMSHVSLYHGMVLGDLIPEFIYPHWDEEYGLPVNKTPKAHNKSYFLTNPDYQGL
IRDLTELKTDRLLLDAAHGGLIPLWRPDFFKNIAGFAVSLHKTGPFPNPLAAVVFRDKGIEVKRALNLIQTTSPSYPLMA
AAEGGVDMLLKVGARAFQKAKELSDHFKEYLKKRGIGFLQDKYPADPLKVTIKAADLGVSGEKIAAKLMKKGIYPEAYGP
GYVLFMFSPGNTEKDVKKLINIIETIKGTDKKIFIPKNPFSFQPELKLTPREVYYAQEKLVDLKASVGYTARDGVTVYPP
GAPVLYPGEEITKEAVEYLEYHLNLGVKVTGIYDGRIKVVR

Specific function: Catalyzes the formation of agmatine from arginine [H]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421 [H]

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C [H]

EC number: =4.1.1.19 [H]

Molecular weight: Translated: 49467; Mature: 49336

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGLIDKIQKHIQKKPISFHMPGHKNGRFIPKKVKNLLGEKYFKADLTELPGLDNLYAPE
CCHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
EAILKLEEKLSRYFGLPRAHLSVNGSTAAVIALLLSFFRPGEKIAIDRMSHVSLYHGMVL
HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH
GDLIPEFIYPHWDEEYGLPVNKTPKAHNKSYFLTNPDYQGLIRDLTELKTDRLLLDAAHG
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHEEEEECCC
GLIPLWRPDFFKNIAGFAVSLHKTGPFPNPLAAVVFRDKGIEVKRALNLIQTTSPSYPLM
CCCCCCCCHHHHHHHHHEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE
AAAEGGVDMLLKVGARAFQKAKELSDHFKEYLKKRGIGFLQDKYPADPLKVTIKAADLGV
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCC
SGEKIAAKLMKKGIYPEAYGPGYVLFMFSPGNTEKDVKKLINIIETIKGTDKKIFIPKNP
CHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC
FSFQPELKLTPREVYYAQEKLVDLKASVGYTARDGVTVYPPGAPVLYPGEEITKEAVEYL
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCEEECCHHHHHHHHHHH
EYHLNLGVKVTGIYDGRIKVVR
HHHHCCCEEEEEEECCEEEEEC
>Mature Secondary Structure 
SGLIDKIQKHIQKKPISFHMPGHKNGRFIPKKVKNLLGEKYFKADLTELPGLDNLYAPE
CHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
EAILKLEEKLSRYFGLPRAHLSVNGSTAAVIALLLSFFRPGEKIAIDRMSHVSLYHGMVL
HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH
GDLIPEFIYPHWDEEYGLPVNKTPKAHNKSYFLTNPDYQGLIRDLTELKTDRLLLDAAHG
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHEEEEECCC
GLIPLWRPDFFKNIAGFAVSLHKTGPFPNPLAAVVFRDKGIEVKRALNLIQTTSPSYPLM
CCCCCCCCHHHHHHHHHEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE
AAAEGGVDMLLKVGARAFQKAKELSDHFKEYLKKRGIGFLQDKYPADPLKVTIKAADLGV
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCC
SGEKIAAKLMKKGIYPEAYGPGYVLFMFSPGNTEKDVKKLINIIETIKGTDKKIFIPKNP
CHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC
FSFQPELKLTPREVYYAQEKLVDLKASVGYTARDGVTVYPPGAPVLYPGEEITKEAVEYL
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCEEECCHHHHHHHHHHH
EYHLNLGVKVTGIYDGRIKVVR
HHHHCCCEEEEEEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969500; 9384377; 1697575; 1936936 [H]