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The map label for this gene is ydhC [H]

Identifier: 78045171

GI number: 78045171

Start: 157452

End: 158141

Strand: Direct

Name: ydhC [H]

Synonym: CHY_0189

Alternate gene names: 78045171

Gene position: 157452-158141 (Clockwise)

Preceding gene: 78044899

Following gene: 78042945

Centisome position: 6.56

GC content: 49.57

Gene sequence:

>690_bases
ATGGGGAGATTAAAACCTATTATCCTTGATAATTACAAGCCTTTAAGGGAGCTGGTTTTTGAGACCTTAAGGGAAGCAAT
TATCAATGGAGTGTTAAAACCCGGGGAGAGGTTGATGGAAGTTCAGCTGGCGGAAGAGCTGGGCGTAAGCCGGACTCCGG
TGCGGGAGGCTATTAGAAAATTAGAGCTGGAAGGTTTTGTGGTGATGATTCCCCGGAAAGGGGCTTATGTGGCGGGGATT
TCGTTAAAAGATGTGGCGGATGTTTTTGAAGTACGGGCGGCTCTGGAAAGCCTTGCCGCAGGCCTTGCGGCGGAAAGGAT
TACCGACGAGGAAATCGAGGAGTTGGAGCGGGTATTGGTGCAGCAACAAAGCCTCGCGGAAAGTGACCGTCTGGAAGATA
TTATTAGAGCTGACACCGATTTTCACGAGGTGCTTTACAGGGCAAGCCGGAATGAACGGCTCATCCAAATTGTAAGCCAT
CTTAGGGAGCAAATTCAGAGATTTCGGACTGCGTCTCTTTCCCAGCCGGGACGGCTGCGGTTAGCTTTAGAGGAACATAA
AGAGATAGTGGAAGCGATAGCCGAACGGAATGTGGAGAAAGCCCAGGCACTGGCCAGGGAACACATCGAGAATGCCGAGC
AGAGCATGATTAACGGGTTAAAAGAAAGAGGCGAATTAATTGGTGATTAA

Upstream 100 bases:

>100_bases
ATTTATTGTCCGCCCGTATGCGGCCGGTCCTACTTGCTTAAAGCTTTAACTCCATAGTAAAATATAATAATACAAATTAT
CGTAGAAATGAGGGGTTAAA

Downstream 100 bases:

>100_bases
TGCGCTGGTATTGGCGGGTAGTCAAAACAACGGAAAACTGGCCCAAATTTGTCCCGAGCCGTATGAAGCGTTAATACCCC
TGAAAGGCCGCCCAATGGTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MGRLKPIILDNYKPLRELVFETLREAIINGVLKPGERLMEVQLAEELGVSRTPVREAIRKLELEGFVVMIPRKGAYVAGI
SLKDVADVFEVRAALESLAAGLAAERITDEEIEELERVLVQQQSLAESDRLEDIIRADTDFHEVLYRASRNERLIQIVSH
LREQIQRFRTASLSQPGRLRLALEEHKEIVEAIAERNVEKAQALAREHIENAEQSMINGLKERGELIGD

Sequences:

>Translated_229_residues
MGRLKPIILDNYKPLRELVFETLREAIINGVLKPGERLMEVQLAEELGVSRTPVREAIRKLELEGFVVMIPRKGAYVAGI
SLKDVADVFEVRAALESLAAGLAAERITDEEIEELERVLVQQQSLAESDRLEDIIRADTDFHEVLYRASRNERLIQIVSH
LREQIQRFRTASLSQPGRLRLALEEHKEIVEAIAERNVEKAQALAREHIENAEQSMINGLKERGELIGD
>Mature_228_residues
GRLKPIILDNYKPLRELVFETLREAIINGVLKPGERLMEVQLAEELGVSRTPVREAIRKLELEGFVVMIPRKGAYVAGIS
LKDVADVFEVRAALESLAAGLAAERITDEEIEELERVLVQQQSLAESDRLEDIIRADTDFHEVLYRASRNERLIQIVSHL
REQIQRFRTASLSQPGRLRLALEEHKEIVEAIAERNVEKAQALAREHIENAEQSMINGLKERGELIGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=208, Percent_Identity=27.8846153846154, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI48994961, Length=218, Percent_Identity=32.1100917431193, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081914, Length=132, Percent_Identity=32.5757575757576, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082149, Length=207, Percent_Identity=26.0869565217391, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789353, Length=230, Percent_Identity=26.5217391304348, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26006; Mature: 25875

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRLKPIILDNYKPLRELVFETLREAIINGVLKPGERLMEVQLAEELGVSRTPVREAIRK
CCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
LELEGFVVMIPRKGAYVAGISLKDVADVFEVRAALESLAAGLAAERITDEEIEELERVLV
HHHCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
QQQSLAESDRLEDIIRADTDFHEVLYRASRNERLIQIVSHLREQIQRFRTASLSQPGRLR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LALEEHKEIVEAIAERNVEKAQALAREHIENAEQSMINGLKERGELIGD
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GRLKPIILDNYKPLRELVFETLREAIINGVLKPGERLMEVQLAEELGVSRTPVREAIRK
CCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
LELEGFVVMIPRKGAYVAGISLKDVADVFEVRAALESLAAGLAAERITDEEIEELERVLV
HHHCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
QQQSLAESDRLEDIIRADTDFHEVLYRASRNERLIQIVSHLREQIQRFRTASLSQPGRLR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LALEEHKEIVEAIAERNVEKAQALAREHIENAEQSMINGLKERGELIGD
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]